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Merge pull request #3 from astamm/master
Code migration for repo transfer
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‎.Rbuildignore

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^.*\.Rproj$
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^\.Rproj\.user$
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.travis.yml
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codecov.yml
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vignettes/Roahd.html
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^\.github$
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^revdep$
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^cran-comments\.md$
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^CRAN-RELEASE$
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^README\.Rmd$
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^_pkgdown\.yml$
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^docs$
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^pkgdown$

‎.github/.gitignore

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*.html

‎.github/workflows/check-standard.yaml

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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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on:
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push:
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branches: [main, master]
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pull_request:
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branches: [main, master]
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name: R-CMD-check
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jobs:
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R-CMD-check:
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }})
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strategy:
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fail-fast: false
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matrix:
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config:
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- {os: macOS-latest, r: 'release'}
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- {os: windows-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
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- {os: ubuntu-latest, r: 'release'}
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- {os: ubuntu-latest, r: 'oldrel-1'}
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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R_KEEP_PKG_SOURCE: yes
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/setup-pandoc@v1
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- uses: r-lib/actions/setup-r@v1
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with:
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r-version: ${{ matrix.config.r }}
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http-user-agent: ${{ matrix.config.http-user-agent }}
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v1
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with:
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extra-packages: rcmdcheck
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- uses: r-lib/actions/check-r-package@v1
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- name: Show testthat output
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if: always()
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run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
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shell: bash
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- name: Upload check results
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if: failure()
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uses: actions/upload-artifact@main
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with:
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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path: check

‎.github/workflows/pkgdown.yaml

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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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on:
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push:
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branches: [main, master]
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tags: ['*']
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name: pkgdown
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jobs:
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pkgdown:
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runs-on: ubuntu-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/setup-pandoc@v1
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- uses: r-lib/actions/setup-r@v1
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with:
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v1
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with:
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extra-packages: pkgdown
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needs: website
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- name: Deploy package
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run: |
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git config --local user.name "$GITHUB_ACTOR"
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git config --local user.email "[email protected]"
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Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'

‎.github/workflows/test-coverage.yaml

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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
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# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
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on:
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push:
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branches: [main, master]
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pull_request:
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branches: [main, master]
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name: test-coverage
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jobs:
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test-coverage:
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runs-on: ubuntu-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/setup-r@v1
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with:
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use-public-rspm: true
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- uses: r-lib/actions/setup-r-dependencies@v1
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with:
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extra-packages: covr
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- name: Test coverage
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run: covr::codecov()
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shell: Rscript {0}

‎.gitignore

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.Rhistory
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.RData
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Rplots.pdf
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vignettes/Roahd.R
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vignettes/Roahd.html
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docs
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*.DS_Store

‎.travis.yml

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This file was deleted.

‎DESCRIPTION

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Package: roahd
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Type: Package
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Title: Robust Analysis of High Dimensional Data
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Version: 1.4.1
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Date: 2018-08-18
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Authors@R: c( person("Nicholas", "Tarabelloni", role = c("aut", "cre"),
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email = "[email protected]"),
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person("Ana", "Arribas-Gil", role = "aut",
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email = "[email protected]" ),
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person("Francesca", "Ieva", role = "aut",
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email = "[email protected]" ),
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person("Anna Maria", "Paganoni", role = "aut",
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email = "[email protected]" ),
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person("Juan", "Romo", role = "aut",
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email = "[email protected]"),
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person("Francesco", "Palma", role = "ctb",
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email = "[email protected]") )
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Author: Nicholas Tarabelloni [aut, cre],
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Ana Arribas-Gil [aut],
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Francesca Ieva [aut],
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Anna Maria Paganoni [aut],
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Juan Romo [aut],
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Francesco Palma [ctb]
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Maintainer: Nicholas Tarabelloni <[email protected]>
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Version: 1.4.3.9000
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Authors@R: c(
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person(given = "Nicholas",
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family = "Tarabelloni",
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role = "aut",
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email = "[email protected]"),
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person(given = "Ana",
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family = "Arribas-Gil",
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role = "aut",
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email = "[email protected]"),
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person(given = "Francesca",
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family = "Ieva",
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role = "aut",
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email = "[email protected]"),
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person(given = "Anna Maria",
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family = "Paganoni",
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role = "aut",
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email = "[email protected]"),
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person(given = "Juan",
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family = "Romo",
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role = "aut",
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email = "[email protected]"),
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person(given = "Francesco",
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family = "Palma",
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role = "ctb",
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email = "[email protected]"),
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person(given = "Aymeric",
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family = "Stamm",
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role = c("ctb", "cre"),
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email = "[email protected]",
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comment = c(ORCID = "0000-0002-8725-3654")),
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person(given = "Antonio",
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family = "Elias-Fernandez",
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role = "ctb"))
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Description: A collection of methods for the robust analysis of univariate and
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multivariate functional data, possibly in high-dimensional cases, and hence
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with attention to computational efficiency and simplicity of use.
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with attention to computational efficiency and simplicity of use. See the R
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Journal publication of Ieva et al. (2019) <doi:10.32614/RJ-2019-032> for an
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in-depth presentation of the 'roahd' package. See Aleman-Gomez et al. (2021)
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<arXiv:2103.08874> for details about the concept of depthgram.
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Depends: R (>= 2.10)
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License: GPL-3
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Encoding: UTF-8
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LazyData: yes
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Suggests:
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testthat,
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testthat (>= 3.0.0),
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knitr,
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rmarkdown
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rmarkdown,
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withr,
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vdiffr
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Imports:
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scales,
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robustbase,
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magrittr,
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dplyr
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dplyr,
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ggplot2,
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plotly
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VignetteBuilder: knitr
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RoxygenNote: 6.0.1
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RoxygenNote: 7.1.2
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Roxygen: list(markdown = TRUE)
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URL: https://astamm.github.io/roahd/, https://github.com/astamm/roahd
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BugReports: https://github.com/astamm/roahd/issues
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Language: en-US
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Config/testthat/edition: 3

‎NAMESPACE

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S3method(as.mfData,list)
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S3method(cov_fun,fData)
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S3method(cov_fun,mfData)
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S3method(depthgram,default)
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S3method(depthgram,fData)
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S3method(depthgram,mfData)
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S3method(fbplot,fData)
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S3method(fbplot,mfData)
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S3method(mean,fData)
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S3method(multiMHI,default)
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S3method(multiMHI,mfData)
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S3method(plot,Cov)
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S3method(plot,depthgram)
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S3method(plot,fData)
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S3method(plot,mfData)
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export("%>%")
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export(BCIntervalSpearman)
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export(BCIntervalSpearmanMultivariate)
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export(BD)
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export(cor_spearman)
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export(cor_spearman_accuracy)
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export(cov_fun)
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export(depthgram)
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export(exp_cov_function)
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export(fDColorPalette)
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export(fData)
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export(toRowMatrixForm)
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export(unfold)
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export(warp)
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importFrom(dplyr,filter)
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importFrom(dplyr,group_by)
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importFrom(dplyr,summarize)
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importFrom(grDevices,col2rgb)
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importFrom(grDevices,dev.cur)
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importFrom(grDevices,dev.set)
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importFrom(grDevices,rgb)
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importFrom(graphics,image)
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importFrom(graphics,lines)
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importFrom(graphics,matplot)
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importFrom(graphics,par)
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importFrom(graphics,plot)
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importFrom(graphics,points)
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importFrom(graphics,polygon)
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importFrom(graphics,text)
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import(ggplot2)
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importFrom(magrittr,"%>%")
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importFrom(stats,approx)
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importFrom(stats,cor)
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importFrom(stats,cov)
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importFrom(stats,pnorm)
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importFrom(stats,qnorm)
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importFrom(stats,quantile)
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importFrom(stats,rnorm)
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importFrom(stats,uniroot)

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