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Genomica.hpp
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Genomica.hpp
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/**
* @file Genomica.hpp
* @brief Declaration of the class for learning module networks
* using the approach of Genomica.
* @author Ankit Srivastava <[email protected]>
*
* Copyright 2020 Georgia Institute of Technology
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
#ifndef GENOMICA_HPP_
#define GENOMICA_HPP_
#include "ModuleNetworkLearning.hpp"
/**
* @brief Class that implements learning of module networks
* using the approach of Genomica.
*
* @tparam Data Type of the object which is used for querying the data.
* @tparam Var Type of variable indices (expected to be an integer type).
* @tparam Set Type of set container.
*/
template <typename Data, typename Var, typename Set>
class Genomica : public ModuleNetworkLearning<Data, Var, Set> {
public:
Genomica(const mxx::comm&, const Data&);
~Genomica();
protected:
void
learnNetwork_sequential(const pt::ptree&, const std::string&) const;
void
learnNetwork_parallel(const pt::ptree&, const std::string&) const;
}; // class Genomica
#include "detail/Genomica.hpp"
#endif // GENOMICA_HPP_