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disease_model2.m
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disease_model2.m
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load('./data/MeshID.mat');
load('./data/CircR2Disease.mat');
load('./data/Mesh_disease.mat');
MeshID_str=cell(4594,20);
disease_Str=cell(4594,2);
for i=1:4594
i
disease_Str(i,1)=strtrim(cellstr(Mesh_Disease(i,1)));
for j=1:11241
if strcmp(disease_Str(i),MeshID(j,1))
disease_Str(i,2)=strcat(disease_Str(i,2),MeshID(j,2),'-');
end
end
end
for i=1:4594
i
j=3;
MeshID_str=add_node2(i,j,MeshID_str,Mesh_Disease{i,1},disease_Str,MeshID);
end
for i=1:4594
MeshID_str(i,1)=Mesh_Disease(i,1);
MeshID_str(i,2)=Mesh_Disease(i,1);
end
for i=1:4594
i
for j=3:20
if ~isempty(MeshID_str{i,j})
Temp3=regexp(MeshID_str{i,j}, '*', 'split');
[h3,l3] = size(Temp3);
for k=1:l3
for p=j:20
if ~isempty(MeshID_str{i,p})
tihuan=strcat('*',Temp3{1,k},'*');
Temp5=strcat('*',MeshID_str{i,p}, '*');
Temp5=strrep(Temp5,tihuan,'*');
if p==j
Temp5=strcat(Temp5,'*',Temp3{1,k});
end
MeshID_str(i,p) = cellstr(Temp5);
end
end
end
end
end
end
for i=1:4594
i
for j=3:20
if ~isempty(MeshID_str{i,j})
Temp_tihuan=regexp(MeshID_str{i,j}, '*', 'split');
Temp6='';
[h0,ll0]=size(Temp_tihuan);
for pp=1:ll0
if ~isempty(Temp_tihuan{1,pp})
Temp6=strcat(Temp_tihuan{1,pp},'*',Temp6);
end
end
MeshID_str(i,j) = cellstr(Temp6);
end
end
end
Dise_Num=100;
disease_num=zeros(Dise_Num,1);
for i=1:Dise_Num
i
for j=1:4594
for k=2:20
if ~isempty(MeshID_str{j,k})
Temp=regexp(MeshID_str{j,k}, '*', 'split');
[h,l]=size(Temp);
for p=1:l
if strcmp(disease(i),Temp(1,p))
disease_num(i)=disease_num(i)+1;
end
end
end
end
end
end
for i=1:Dise_Num
if disease_num(i,1) ~=0
disease_num(i,2)=-log2(disease_num(i,1)/4594);
else
disease_num(i,2)=0;
end
end
load('./data/disease_model1_DV.mat');
SS=zeros(Dise_Num,Dise_Num);
value_Same=0;
for i=1:Dise_Num
i
for j=1:Dise_Num
if isempty(DV{i,3})|| isempty(DV{j,3})
SS(i,j)=0;
else
dis1_str='';
dis2_str='';
for k=2:10
if ~isempty(DV{i,k})
dis1_str=strcat(dis1_str,DV{i,k});
end
end
for k=2:10
if ~isempty(DV{j,k})
dis2_str=strcat(dis2_str,DV{j,k});
end
end
dis1=regexp(dis1_str,'*','split');
dis2=regexp(dis2_str,'*','split');
[h5,l5] = size(dis1);
[h6,l6] = size(dis2);
for p=1:l5-1
for q=1:l6-1
if strcmpi(dis1(1,p),dis2(1,q))
for k=1:Dise_Num
if strcmp(dis1(1,p),disease(k,1))
value_Same=disease_num(k,2);
break;
end
end
SS(i,j)=2*value_Same/(DV{i,1}+DV{j,1});
end
end
end
end
if i==j
SS(i,j)=1;
end
end
end