ci #87
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name: ci | |
on: | |
push: | |
branches: | |
- "main" | |
pull_request: | |
branches: | |
- "main" | |
schedule: | |
# Nightly tests run on main by default: | |
# Scheduled workflows run on the latest commit on the default or base branch. | |
# (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule) | |
- cron: '0 0 */5 * *' # Run every 5 days | |
workflow_dispatch: | |
concurrency: | |
group: "${{ github.workflow }}-${{ github.ref }}" | |
cancel-in-progress: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v2 | |
- name: Install docker-compose | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y docker-compose | |
- name: Copy example env file | |
run: | | |
cp devtools/deployment/.env.example .env | |
- name: Make OpenEye directory | |
run: | | |
mkdir -p ~/.OpenEye | |
- name: Copy OpenEye license file | |
env: | |
OE_LICENSE: ${{ secrets.OE_LICENSE }} | |
run: | | |
echo "$OE_LICENSE" > ~/.OpenEye/oe_license.txt | |
- name: Build containers | |
run: | | |
docker-compose -f docker-compose-dev.yml build --build-arg USER_ID=$(id -u) --build-arg GROUP_ID=$(id -g) | |
docker container ls | |
docker-compose -f docker-compose-dev.yml up -d | |
- name: Chown volume | |
run: | | |
ls -alsh | |
ls -alsh argos | |
sudo chown -R $(id -u):$(id -g) argos/pdb_data | |
- name: Run tests | |
run: | | |
docker-compose -f docker-compose-dev.yml exec -T web bash -c "cd argos && /opt/conda/bin/python manage.py test --no-input" |