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artic-tools check_vcf Segmentation fault on empty VCF files #88
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I opened a PR in |
Thanks @jts and sorry for the delay! Looks good to me. I'll make a new artic-tools release and bump the conda version. |
@will-rowe thanks for merging and updating the release version. Will the conda version be updated as well (currently at 0.3.0). |
I'll get on this now - I had hoped for an automatic bump but nm! |
Sorry for the delay here - some issues getting it into conda. I'm quite busy atm so will have to look at this over the weekend/next week. |
Issue:
artic-tools check_vcf
produces a segmentation fault when VCF files have no mutations (i.e. negative control samples).Version:
Steps to reproduce:
Ran
artic-tools check_vcf --summaryOut summary.out sample.merged.vcf.gz SARS-CoV-2.scheme.bed
sample.merged.vcf.gz has a VCF header but no mutations in the file
Log output:
The text was updated successfully, but these errors were encountered: