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Request for RSV reference GISAID, GenBank, or other ID #5

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danpolanco opened this issue Mar 20, 2024 · 1 comment
Open

Request for RSV reference GISAID, GenBank, or other ID #5

danpolanco opened this issue Mar 20, 2024 · 1 comment

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@danpolanco
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We at Colorado are testing different primers and are interested in knowing what references were picked for RSV-A and RSV-B. If you have it, could you provide us with a GISAID, GenBank, or other ID?
@Desperate-Dan
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Hi danpolanco, the sequence IDs we used for the primer scheme generation are as follows:

RSVA:
EPI_ISL_1647421
EPI_ISL_1520435
EPI_ISL_2543800
EPI_ISL_1834101
EPI_ISL_12529646
EPI_ISL_9003918

RSVB:
EPI_ISL_1647600
EPI_ISL_1834174
EPI_ISL_2543853
EPI_ISL_1760384
EPI_ISL_11055801
EPI_ISL_9003920

If you're interested in trying our approach out please get in touch via the email on our original virological post.

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@danpolanco @Desperate-Dan