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CLI seg faults #1106

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zeeev opened this issue Oct 29, 2024 · 0 comments
Open

CLI seg faults #1106

zeeev opened this issue Oct 29, 2024 · 0 comments

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@zeeev
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zeeev commented Oct 29, 2024 •
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Howdy,

Here are two patterns that cause seg faults -- obviously user error, but documenting either way. The errors will reproduce with any bed file.

Case 1: accidentally specifying -i instead of -a

bedtools intersect -i benchmark.bed.gz -b gw.bed > intersect_hcr.bed

Case 2: specifying -b twice instead of -a

bedtools subtract -b gw-asm-hq.bed -b dip.bed

version: bedtools v2.30.0
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@zeeev