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Issues list

Inconsistent naming convention warning
#1109 opened Nov 28, 2024 by fa8sanger
Bedtools Genomecov -pc Option: Name-Sorted BAM File Error in Version 2.31.0
#1108 opened Nov 14, 2024 by yeeun3712
Line limit of bedtools getfasta and other sub-commands?
#1107 opened Nov 11, 2024 by YuanfengZhang
CLI seg faults
#1106 opened Oct 29, 2024 by zeeev
Strand specific behavior is broken
#1103 opened Aug 21, 2024 by Thomas1664
terminate called after throwing an instance of 'std::out_of_range'
#1102 opened Aug 14, 2024 by hullv
Two Errors in Infographic for jaccard function
#1101 opened Aug 9, 2024 by keksundso
Latest conda version throws error for large chromStart values
#1099 opened Jul 25, 2024 by SohaibRais
2
Error: Invalid record in file
#1098 opened Jul 23, 2024 by r-poloni
need to include cstdint in ParseTools.h
#1096 opened Jun 19, 2024 by emyr666
Number can not keep consistant
#1092 opened May 30, 2024 by hsymoon
1
Are there any means to speedup intersect?
#1091 opened May 18, 2024 by lokapal
Option to skip first line
#1090 opened Apr 27, 2024 by bskubi
shuffle -incl: Fall out of -incl include.bed file
#1089 opened Apr 26, 2024 by chenludi
2
Undefined behavior in bedtools expand
#1088 opened Apr 25, 2024 by SoapGentoo
Command bedtools makewindows -w 200 -s 50 -g resources/hg19.autoX.chrom.sizes not working
#1086 opened Apr 19, 2024 by gurudatta-patil
The bedtools multiinter -header option outputs broken BED
#1085 opened Apr 5, 2024 by dbolser
2
getfasta -rna option does not work for plus strand line when setting -s option
#1084 opened Mar 27, 2024 by NaotoKubota
1
unable to install
#1082 opened Mar 13, 2024 by Heather1999
1
Stitching read pair R1 andf R2 sequences based on alignment from SAM/BAM
#1081 opened Feb 15, 2024 by mmokrejs
genomecov -d -pc -ibam showing no coverage for every position
#1080 opened Feb 15, 2024 by gcabebe
2
tutorial link broken
#1079 opened Jan 28, 2024 by notestaff
1
Example BED file(s) referenced throughout the docs are not tab delimited
#1078 opened Jan 24, 2024 by skchronicles
Bedtools install on Mac
#1077 opened Jan 19, 2024 by luigallucci
3
remote file support
#1076 opened Jan 12, 2024 by geertvandeweyer
ProTip! Updated in the last three days: updated:>2024-11-27.