Issue With Installation for ANTS

[J-V1]

Hi, I am still new to clinicaDL and was having an issue while following the installation steps for windows. It states that ANTS path variable is not set. I have ANTS installed on the linux subsystem, but was confused on the issue as I thought I had installed it correctly. Any help would be greatly appreciated!

I have tried the "which antsRegistration" and "antsRegistrationSyN.sh" commands and they are working as intended, Im just not sure how to access ANTS from where I am running the clincia env in windows?

[ghisvail]

@J-V1 The issue seems to be with your execution environment rather than Clinica or ClincaDL specifically.

I have ANTS installed on the linux subsystem

How did you install ANTs on WSL?

ANTSPATH variable is not set.

It seems like the ANTSPATH envvar is not set. It should point to where the ANTS binaries are installed.

Please consider setting it manually, or via your shell init scripts.