compiler.sh

#TODO add options for clean/noclean, make/nomake, cython/nocython
#TODO include instuctions on blowing away entire package for fresh install e.g. rm -r ~/venvs/mesh/lib/python3.6/site-packages/troute/*
#set root folder of github repo (should be named t-route)
REPOROOT=`pwd`
#For each build step, you can set these to true to make it build
#or set it to anything else (or unset) to skip that step
build_mc_kernel=true
build_diffusive_tulane_kernel=true
build_reservoir_kernel=true
build_framework=true
build_routing=true
build_config=true
build_nwm=true

if [ -z "$F90" ]
then
    export F90="gfortran"
    echo "using F90=${F90}"
fi
if [ -z "$CC" ]
then
    export CC="gcc"
    echo "using CC=${CC}"
fi

#preserve old/default behavior of installing packages with -e
E="-e"
if [ "$1" == 'no-e' ]
then
E=""
fi

#if you have custom static library paths, uncomment below and export them
#export LIBRARY_PATH=<paths>:$LIBRARY_PATH
#if you have custom dynamic library paths, uncomment below and export them
#export LD_LIBRARY_PATHS=<paths>:$LD_LIBRARY_PATHS
if [ -z "$NETCDF" ]
then
    export NETCDFINC=/usr/include/openmpi-x86_64/
    # set alternative NETCDF variable include path, for example for WSL
    # (Windows Subsystems for Linux).
    #
    # EXAMPLE USAGE: export NETCDFALTERNATIVE=$HOME/.conda/envs/py39/include/
    # (before ./compiler.sh)
    if [ -n "$NETCDFALTERNATIVE" ]
    then
	echo "using alternative NETCDF inc ${NETCDFALTERNATIVE}"
	export NETCDFINC=$NETCDFALTERNATIVE
    fi
else
    export NETCDFINC="${NETCDF}"
fi
echo "using NETCDFINC=${NETCDFINC}"

if  [[ "$build_mc_kernel" == true ]]; then
  #building reach and resevoir kernel files .o
  cd $REPOROOT/src/kernel/muskingum/
  make clean
  make  || exit
  make install || exit
fi

if  [[ "$build_diffusive_tulane_kernel" == true ]]; then
  #building reach and resevoir kernel files .o  
  cd $REPOROOT/src/kernel/diffusive/
  make clean
  make diffusive.o
  make pydiffusive.o
  make install || exit
fi

if [[ "$build_reservoir_kernel" == true ]]; then
  cd $REPOROOT/src/kernel/reservoir/
  make clean
  #make NETCDFINC=`nc-config --includedir` || exit
  #make binding_lp.a
  #make install_lp || exit
  make
  make install_lp || exit
  make install_rfc || exit

fi

if [[ "$build_framework" == true ]]; then
  #creates troute package
  cd $REPOROOT/src/troute-network
  rm -rf build
  ##python setup.py --use-cython install
  ##python setup.py --use-cython develop
  CC=${CC} python setup.py build_ext --inplace --use-cython || exit
  pip install $E . || exit
fi

if [[ "$build_routing" == true ]]; then
  #updates troute package with the execution script
  cd $REPOROOT/src/troute-routing
  rm -rf build
  #python setup.py --use-cython install
  #python setup.py --use-cython develop
  CC=${CC} python setup.py build_ext --inplace --use-cython || exit
  pip install $E . || exit
fi

if [[ "$build_config" == true ]]; then
  #updates troute package with the execution script
  cd $REPOROOT/src/troute-config
  pip install $E . || exit
fi

if [[ "$build_nwm" == true ]]; then
  #updates troute package with the execution script
  cd $REPOROOT/src/troute-nwm
  pip install $E . || exit
fi