load_utils.fov_to_ome
is prohibitively slow for large cohorts
#44
Labels
enhancement
New feature or request
load_utils.fov_to_ome
is prohibitively slow for large cohorts
#44
Is your feature request related to a problem? Please describe.
There have been use cases where users would like to create corresponding OME-TIFFs for each FOV in a large cohort. This often arises in the need for data ingestion, where OME-TIFFs are often the choice format.
The current schema requires all of the FOVs to be loaded into memory first, then iteratively written. This is prohibitive both from a time and a space standpoint.
Describe the solution you'd like
Instead of loading in all the FOVs at once, iteratively load in each FOV one at a time. In that way, the users can see the FOVs written immediately and there won't be any memory concerns.
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