This is the repository associated with the publication Single cell BCR and RNA analysis after respiratory virus infection reveals spatiotemporal dynamics of antigen specific B cell response.
This repository contains the code and supporting files necessary to reproduce the analyses reported in the publication. In essence, the anlaysis workflow herein was done using the Sauron analysis philosophy.
To re-run the analysis of the scRNA-Seq data, the necessary workflow and scripts can be found in the scripts/scRNAseq_pipeline/ subdirectory.
Scripts necessary to reproduce the analysis of the B-cell receptor sequencing data can be found in the scripts/VDJ_analysis/ subdirectory.