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When running extract_data.py against a version 3 LOVD database (http://databases.lovd.nl/shared/, specifically), the method where the list of genes is constructed (https://github.com/andrewhill157/leiden/blob/master/leiden/leiden_database.py#L196) fetches a maximum of 1000 genes, because it only fetches the first page. This causes requests for specific genes via the -o switch to fail if they're not listed on the first page.
I've patched in a fix in my fork, which I will submit shortly as a pull request.
The text was updated successfully, but these errors were encountered:
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When running extract_data.py against a version 3 LOVD database (http://databases.lovd.nl/shared/, specifically), the method where the list of genes is constructed (https://github.com/andrewhill157/leiden/blob/master/leiden/leiden_database.py#L196) fetches a maximum of 1000 genes, because it only fetches the first page. This causes requests for specific genes via the -o switch to fail if they're not listed on the first page.
I've patched in a fix in my fork, which I will submit shortly as a pull request.
The text was updated successfully, but these errors were encountered: