Support creation of Sphinx documentation

Author: henryborchers

README.md

@@ -32,6 +32,13 @@ If you intend to develop the code for your proposes or contribute to the open so
 * Run tests
   `python -m pytest`
 
+### Building the documentation
+* Activate virtual env (see Install from source)
+* Install sphinx and myst-parser
+  `pip install sphinx myst-parser`
+* Run sphinx-build command
+  `sphinx-build ./docs ./dist/docs`
+
 
 ### Commands:
 

docs/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/conf.py

@@ -0,0 +1,31 @@
+# Configuration file for the Sphinx documentation builder.
+#
+# For the full list of built-in configuration values, see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+project = 'qct-parse'
+copyright = '2024, AMIA Open-Source'
+author = 'AMIA Open-Source'
+
+# -- General configuration ---------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
+
+extensions = ['myst_parser']
+
+templates_path = ['_templates']
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+source_suffix = {
+    '.rst': 'restructuredtext',
+    '.txt': 'markdown',
+    '.md': 'markdown',
+}
+
+# -- Options for HTML output -------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
+
+html_theme = 'alabaster'
+html_static_path = ['_static']

docs/development.md

@@ -0,0 +1,29 @@
+# Development Information
+
+## Configure Development Environment
+
+* Create a new Python Virtual Environment for qct_parse
+    * Unix based (Mac or Linux):    
+      `python3 -m venv name_of_env`
+    * Windows:    
+      `py -m venv name_of_env`
+      (where 'name_of_env' is replaced with the name of your virtual environment)
+* Activate virtual env
+    * Unix based (Mac or Linux):     
+      `source ./name_of_env/bin/activate`
+    * Windows:     
+      `name_of_env\scripts\activate`
+* Install Package as editable package
+    * Navigate to the repo root directory `path/to/qct-parse/`
+    * Run the command:    
+      `python -m pip install -e .`
+
+## Run Tests
+
+If you intend to develop the code for your proposes or contribute to the open source project, a test directory is provided in the repo.
+* Activate virtual env (see Configure Development Environment)
+* Install pytest
+  `pip install pytest`
+* Run tests
+  `python -m pytest`
+

docs/index.rst

@@ -0,0 +1,14 @@
+.. qct-parse documentation master file, created by
+   sphinx-quickstart on Tue Dec  3 20:53:22 2024.
+   You can adapt this file completely to your liking, but it should at least
+   contain the root `toctree` directive.
+
+qct-parse documentation
+=======================
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   readme
+   development

docs/make.bat

@@ -0,0 +1,35 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=.
+set BUILDDIR=_build
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.https://www.sphinx-doc.org/
+	exit /b 1
+)
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+
+:end
+popd

docs/readme.rst

@@ -0,0 +1,2 @@
+.. include:: ../README.md
+   :parser: myst_parser.sphinx_