Release v0.6.0

Author: althonos

.github/workflows/package.yml

@@ -115,7 +115,7 @@ jobs:
         CIBW_BEFORE_BUILD: pip install cython
         CIBW_BUILD_VERBOSITY: 2
         CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
-        CIBW_TEST_REQUIRES: importlib-resources biopython
+        CIBW_TEST_REQUIRES: importlib-resources
         CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=10.12
       with:
         output-dir: dist
@@ -148,7 +148,7 @@ jobs:
         CIBW_BEFORE_BUILD: pip install cython
         CIBW_BUILD_VERBOSITY: 2
         CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
-        CIBW_TEST_REQUIRES: importlib-resources biopython
+        CIBW_TEST_REQUIRES: importlib-resources
         CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=10.12
       with:
         output-dir: dist
@@ -245,6 +245,8 @@ jobs:
     environment: PyPI
     runs-on: ubuntu-latest
     name: Upload
+    permissions:
+      id-token: write
     needs:
     - sdist
     - test-sdist

CHANGELOG.md

@@ -6,7 +6,25 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyfastani/compare/v0.5.1...HEAD
+[Unreleased]: https://github.com/althonos/pyfastani/compare/v0.6.0...HEAD
+
+
+## [v0.6.0] - 2024-10-22
+[v0.6.0]: https://github.com/althonos/pyfastani/compare/v0.5.1...v0.6.0
+
+### Changed
+- Rewrite package build using `scikit-build-core`.
+- Update documentation to use the PyData theme.
+- Bump embedded `cpu-features` library to `v0.9.0`.
+
+### Added
+- Support for Python 3.13.
+
+### Fixed
+- Null pointer dereference in FASTA parser deallocation.
+
+### Removed
+- Support for Python 3.6.
 
 
 ## [v0.5.1] - 2024-02-20

docs/_static/json/switcher.json

@@ -1,6 +1,11 @@
 [
     {
-        "name": "v0.5 (latest)",
+        "name": "v0.6 (latest)",
+        "version": "0.6.0",
+        "url": "https://pytantan.readthedocs.io/en/v0.6.0/"
+    },
+    {
+        "name": "v0.5",
         "version": "0.5.1",
         "url": "https://pytantan.readthedocs.io/en/v0.5.1/"
     },

pyproject.toml

@@ -1,10 +1,10 @@
 [build-system]
-requires = ["scikit-build-core", "cython >=3.0", "scoring-matrices ~=0.3.0"]
+requires = ["scikit-build-core", "cython >=3.0"]
 build-backend = "scikit_build_core.build"
 
 [project]
 name = "pyfastani"
-version = "0.5.1"
+version = "0.6.0"
 description = "Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation."
 readme = "README.md"
 requires-python = ">=3.7"

src/pyfastani/__init__.py

@@ -12,7 +12,7 @@
 
 __author__ = "Martin Larralde <martin.larralde@embl.de>"
 __license__ = "MIT"
-__version__ = "0.5.1"
+__version__ = "0.6.0"
 
 __doc__ = _fastani.__doc__
 __all__ = [