requirements.txt

# This file was autogenerated by uv via the following command:
datashader
holoviews
scipy
#    uv pip compile pyproject.toml
aiohappyeyeballs==2.4.4
    # via aiohttp
aiohttp==3.11.10
    # via torch-geometric
aiosignal==1.3.2
    # via aiohttp
anyio==4.7.0
    # via starlette
appnope==0.1.4
    # via ipykernel
asttokens==3.0.0
    # via stack-data
attrs==24.3.0
    # via aiohttp
certifi==2024.12.14
    # via requests
charset-normalizer==3.4.0
    # via requests
click==8.1.7
    # via
    #   marimo
    #   uvicorn
comm==0.2.2
    # via ipykernel
contourpy==1.3.1
    # via matplotlib
cycler==0.12.1
    # via matplotlib
debugpy==1.8.11
    # via ipykernel
decorator==5.1.1
    # via ipython
docutils==0.21.2
    # via marimo
executing==2.1.0
    # via stack-data
filelock==3.16.1
    # via torch
fonttools==4.55.3
    # via matplotlib
frozenlist==1.5.0
    # via
    #   aiohttp
    #   aiosignal
fsspec==2024.10.0
    # via
    #   torch
    #   torch-geometric
h11==0.14.0
    # via uvicorn
h5py==3.12.1
    # via micrography (pyproject.toml)
idna==3.10
    # via
    #   anyio
    #   requests
    #   yarl
imageio==2.36.1
    # via scikit-image
ipykernel==6.29.5
    # via micrography (pyproject.toml)
ipython==8.30.0
    # via ipykernel
itsdangerous==2.2.0
    # via marimo
jedi==0.19.2
    # via
    #   ipython
    #   marimo
jinja2==3.1.4
    # via
    #   torch
    #   torch-geometric
joblib==1.4.2
    # via scikit-learn
jupyter-client==8.6.3
    # via ipykernel
jupyter-core==5.7.2
    # via
    #   ipykernel
    #   jupyter-client
kiwisolver==1.4.7
    # via matplotlib
lazy-loader==0.4
    # via scikit-image
llvmlite==0.43.0
    # via numba
marimo==0.10.2
    # via micrography (pyproject.toml)
markdown==3.7
    # via
    #   marimo
    #   pymdown-extensions
markupsafe==3.0.2
    # via jinja2
matplotlib==3.10.0
    # via seaborn
matplotlib-inline==0.1.7
    # via
    #   ipykernel
    #   ipython
mpmath==1.3.0
    # via sympy
multidict==6.1.0
    # via
    #   aiohttp
    #   yarl
narwhals==1.18.4
    # via marimo
nest-asyncio==1.6.0
    # via ipykernel
networkx==3.4.2
    # via
    #   micrography (pyproject.toml)
    #   scikit-image
    #   torch
numba==0.60.0
    # via micrography (pyproject.toml)
numpy==2.0.2
    # via
    #   contourpy
    #   h5py
    #   imageio
    #   matplotlib
    #   numba
    #   pandas
    #   scikit-image
    #   scikit-learn
    #   scipy
    #   seaborn
    #   tifffile
    #   torch-geometric
    #   torchvision
packaging==24.2
    # via
    #   ipykernel
    #   lazy-loader
    #   marimo
    #   matplotlib
    #   scikit-image
pandas==2.2.3
    # via seaborn
parso==0.8.4
    # via jedi
pexpect==4.9.0
    # via ipython
pillow==11.0.0
    # via
    #   micrography (pyproject.toml)
    #   imageio
    #   matplotlib
    #   scikit-image
    #   torchvision
platformdirs==4.3.6
    # via jupyter-core
polars==1.17.1
    # via micrography (pyproject.toml)
prompt-toolkit==3.0.48
    # via ipython
propcache==0.2.1
    # via
    #   aiohttp
    #   yarl
psutil==6.1.0
    # via
    #   ipykernel
    #   marimo
    #   torch-geometric
ptyprocess==0.7.0
    # via pexpect
pure-eval==0.2.3
    # via stack-data
pyarrow==18.1.0
    # via micrography (pyproject.toml)
pygments==2.18.0
    # via
    #   ipython
    #   marimo
pymdown-extensions==10.12
    # via marimo
pyparsing==3.2.0
    # via
    #   matplotlib
    #   torch-geometric
python-dateutil==2.9.0.post0
    # via
    #   jupyter-client
    #   matplotlib
    #   pandas
pytz==2024.2
    # via pandas
pyyaml==6.0.2
    # via
    #   marimo
    #   pymdown-extensions
pyzmq==26.2.0
    # via
    #   ipykernel
    #   jupyter-client
requests==2.32.3
    # via
    #   micrography (pyproject.toml)
    #   torch-geometric
ruff==0.8.3
    # via marimo
scikit-image==0.25.0
    # via micrography (pyproject.toml)
scikit-learn==1.6.0
    # via micrography (pyproject.toml)
scipy==1.14.1
    # via
    #   scikit-image
    #   scikit-learn
seaborn==0.13.2
    # via micrography (pyproject.toml)
six==1.17.0
    # via python-dateutil
sniffio==1.3.1
    # via anyio
stack-data==0.6.3
    # via ipython
starlette==0.42.0
    # via marimo
sympy==1.13.3
    # via torch
threadpoolctl==3.5.0
    # via scikit-learn
tifffile==2024.12.12
    # via scikit-image
tomlkit==0.13.2
    # via marimo
torch==2.4.1
    # via
    #   micrography (pyproject.toml)
    #   torchaudio
    #   torchvision
torch-geometric==2.6.1
    # via micrography (pyproject.toml)
torchaudio==2.4.1
    # via micrography (pyproject.toml)
torchvision==0.19.1
    # via micrography (pyproject.toml)
tornado==6.4.2
    # via
    #   ipykernel
    #   jupyter-client
tqdm==4.67.1
    # via
    #   micrography (pyproject.toml)
    #   torch-geometric
traitlets==5.14.3
    # via
    #   comm
    #   ipykernel
    #   ipython
    #   jupyter-client
    #   jupyter-core
    #   matplotlib-inline
typing-extensions==4.12.2
    # via
    #   anyio
    #   ipython
    #   torch
tzdata==2024.2
    # via pandas
urllib3==2.2.3
    # via requests
uvicorn==0.34.0
    # via marimo
wcwidth==0.2.13
    # via prompt-toolkit
websockets==14.1
    # via marimo
yarl==1.18.3
    # via aiohttp