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If you use this tool, please cite us -

Qasim, M. N., Arevalo, A. V., Paropkari, A. D., Ennis, C. L., Sindi, S. S., Nobile, C. J., Hernday, A. D. Genome-wide Profiling of Transcription Factor-DNA Binding Interactions in Candida albicans: A Comprehensive CUT&RUN Method and Data Analysis Workflow. J. Vis. Exp. (182), e63655, doi:10.3791/63655 (2022).

CUT&RUN analysis workflow

An analysis workflow for analyzing transcription factor-DNA binding data from CUT&RUN experiments.

Please see the workflow details presented here - Computational Workflow