gems.yml

---
ai4r:
  category: ai
  description: Artificial intelligence
  module: Ai4r
  version: "~> 1.13"
algorithms:
  category: utilities
  description: Algorithms and data structures
  module:
  - Algorithms
  - Containers
  version: "~> 0.6"
awesome_print:
  category: utilities
  description: Pretty object printing
  version: "~> 1.6"
bibsync:
  category: publishing
  description: Bibliography synchronization
  module: BibSync
  version: "~> 0.0"
bibtex-ruby:
  category: publishing
  description: BibTeX parser
  module: BibTeX
  require: bibtex
  version: "~> 4.0"
bio:
  category: biology
  description: Bioinformatics suite
  module: Bio
  version: "~> 1.4"
cassowary:
  category: optimization
  description: Incremental constraint solver
  exclude: Native dependencies
  module: Cassowary
classifier-reborn:
  category: ai
  description: Machine learning
  module: ClassifierReborn
  version: "~> 2.0"
cmath:
  category: algebra
  description: Stdlib cmath module
  module: CMath
  owner: stdlib
ctioga2:
  category: plotting
  description: Command line tool for tioga
  version: "~> 0.1"
daru:
  category: data
  description: Dataframe library
  module: Daru
  version: "~> 0.0"
darwinning:
  category: optimization
  description: Genetic algorithms
  module: Darwinning
  version: "~> 0.0"
decisiontree:
  category: ai
  description: Machine learning
  module: DecisionTree
  version: "~> 0.5"
distribution:
  category: statistics
  description: Statistical distributions
  module: Distribution
  owner: sciruby
  version: "~> 0.7"
extendmatrix:
  category: algebra
  description: Helper methods for Matrix
  owner: sciruby
  version: "~> 0.4"
gga4r:
  category: optimization
  description: Genetic algorithms
  module: GeneticAlgorithm
  version: "~> 0.9"
gimuby:
  category: optimization
  description: Genetic algorithms
  module: Gimuby
  version: "~> 0.7"
gnuplot:
  category: plotting
  description: Plotting library
  module: Gnuplot
  version: "~> 2.6"
gnuplotrb:
  category: plotting
  description: Plotting library
  module: GnuplotRB
  version: "~> 0.2"
gphys:
  category: physics
  description: Grided physical data
  exclude: narray dependency
  module: GPhys
gruff:
  category: plotting
  description: Plotting library
  module: Gruff
  version: "~> 0.6"
gsl:
  category: numerics
  description: Bindings for the GNU scientific library
  module: GSL
  owner: sciruby
  version: "~> 2.1"
hamster:
  category: utilities
  description: Efficient persistent data structures
  module:
  - Hamster
  version: "~> 3.0"
histogram:
  category: statistics
  description: Histogram method
  module: Histogram
  version: "~> 0.2"
integration:
  category: numerics
  description: Numerical integration
  module: Integration
  owner: sciruby
  version: "~> 0.1"
irtruby:
  category: ai
  description: Machine learning
  exclude: Not available as a gem
  module: IRT
iruby:
  category: ui
  description: Ruby kernel for Jupyter
  module: IRuby
  owner: sciruby
  version: "~> 0.2"
liblinear-ruby:
  category: ai
  description: Linear classifier
  module: Liblinear
  require: liblinear
  version: "~> 1.0"
lpsolve:
  category: optimization
  description: Linear solver
  exclude: Outdated native dependencies
  module: LPSolve
mathgl:
  category: plotting
  description: Plotting library
  exclude: Native dependencies
  module: MathGL
matrix:
  category: algebra
  description: Stdlib matrix module
  module:
  - Matrix
  - Vector
  owner: stdlib
mdarray:
  category: numerics
  description: Numerical matrix library
  exclude: Requires JRuby
  module: MDArray
measurable:
  category: ai
  description: Distance measures for machine learning
  module: Measurable
  version: "~> 0.0"
mikon:
  category: data
  description: Dataframe library
  module: Mikon
  version: "~> 0.0"
minimization:
  category: numerics
  description: Numerical minimization
  module: Minimization
  owner: sciruby
  version: "~> 0.2"
mixed_models:
  category: statistics
  description: Fit statistical models
  exclude: Bad version constraints on daru
  module: MixedModels
modshogun:
  category: ai
  description: Machine learning
  exclude: Not available as a gem
  module: Modshogun
narray:
  category: numerics
  description: Numerical matrix library
  exclude: Conflicts with nmatrix
  module: NArray
nmatrix:
  category: numerics
  description: Numerical matrix library
  module:
  - N
  - NMatrix
  - NVector
  owner: sciruby
  version: "~> 0.2"
nyaplot:
  category: plotting
  description: Plotting library
  module: Nyaplot
  version: "~> 0.1"
octave-ruby:
  category: numerics
  description: Interface to Octave
  exclude: Native dependencies
  module: Octave
  require: octave
ode:
  category: numerics
  description: Ordinary differential equations
  exclude: Fortran dependencies
  module: Ode
omoikane:
  category: ai
  description: Machine learning
  exclude: Outdated nmatrix dependency
  module: Omoikane
parallel:
  category: utilties
  description: Parallel processing
  module: Parallel
  version: "~> 1.6"
phys-units:
  category: physics
  description: Calculation with units
  module:
  - Phys::Unit
  - Phys::Quantity
  require: phys/units
  version: "~> 0.9"
plotrb:
  category: plotting
  description: Plotting library
  module: Plotrb
  version: "~> 0.0"
plplot:
  category: plotting
  description: PLplot bindings
  exclude: Outdated gem
  module: PLplot
prime:
  category: algebra
  description: Stdlib prime module
  module: Prime
  owner: stdlib
pry:
  category: ui
  description: Ruby shell
  module: Pry
  version: "~> 0.10"
publisci:
  category: publishing
  description: Publishing toolkit
  exclude: Installation fails
  module: PubliSci
rb-libsvm:
  category: ai
  description: Support vector machines (machine learning)
  module: Libsvm
  require: libsvm
  version: "~> 1.3"
rbczmq:
  category: ui
  description: Needed by iruby
  version: "~> 1.7"
rbmetis:
  category: graph
  description: Graph partitioning
  exclude: Native dependencies
  module: RbMetis
rinruby:
  category: statistics
  description: R interpreter
  exclude: Outdated gem
  module:
  - R
  - RinRuby
rsemantic:
  category: ai
  description: Machine learning
  exclude: GSL dependency
  module: RSemantic
rserve-client:
  category: statistics
  description: R interpreter
  module: Rserve
  require: rserve
  version: "~> 0.3"
rsruby:
  category: statistics
  description: R interpreter
  exclude: Native dependencies
  module: RSRuby
ruby-band:
  category: ai
  description: Data mining
  exclude: Requires JRuby
ruby-dcl:
  category: plotting
  description: Plotting
  exclude: Requires narray
  module: NumRu::DCL
ruby-fann:
  category: ai
  description: Neural networks
  module: RubyFann
  version: "~> 1.2"
ruby-fftw3:
  category: numerics
  description: Fast Fourier transformation
  exclude: Requires narray
  module: FFTW3
ruby-minisat:
  category: algebra
  description: SAT solver
  module: MiniSat
  require: minisat
  version: "~> 2.2"
ruby-netcdf:
  category: data
  description: Data file
  exclude: Requires narray
  module: NumRu::NetCDF
ruby-opencv:
  category: ai
  description: Computer vision
  exclude: Native dependencies
  module: OpenCV
  require: opencv
ruby-pgplot:
  category: plotting
  description: Plotting
  exclude: Requires narray
  module: Pgplot
  require: pgplot
rubyvis:
  category: plotting
  description: Plotting library
  module: Rubyvis
  version: "~> 0.5"
sciruby:
  category: meta
  description: SciRuby meta gem
  owner: sciruby
sciruby-full:
  category: meta
  description: SciRuby meta gem (Full installation)
  owner: sciruby
statsample:
  category: statistics
  description: Statistics
  module: Statsample
  owner: sciruby
  version: "~> 2.0"
statsample-bivariate-extension:
  category: statistics
  description: Statsample extension (Autoloaded)
  version: "~> 1.2"
statsample-glm:
  category: statistics
  description: Statistics
  module: Statsample::GLM
  owner: sciruby
  version: "~> 0.2"
statsample-optimization:
  category: statistics
  description: Statsample extension (Autoloaded)
  exclude: GSL conflict
statsample-sem:
  category: statistics
  description: Statistics
  exclude: Outdated dependencies
  module: Statsample::SEM
statsample-timeseries:
  category: statistics
  description: Statistics
  module: Statsample::TimeSeries
  version: "~> 0.3"
stuff-classifier:
  category: ai
  description: Machine learning
  exclude: Outdated gem
  module: StuffClassifier
symbolic:
  category: algebra
  description: Symbolic math
  exclude: Outdated gem
  module: Symbolic
symengine:
  category: algebra
  description: Symbolic math
  exclude: Gem is broken
  module: SymEngine
tioga:
  category: plotting
  description: Scientific plots with PDF and TeX
  version: "~> 1.19"
treat:
  category: linguistics
  description: Natural language processing
  exclude: birch doesn't compile with 2.2
  module: Treat
unit:
  category: physics
  description: Calculation with units
  module: Unit
  version: "~> 0.5"