data_helper.py

    import os
import glob
import pandas as pd
import numpy as np
from PIL import Image
import torch
from torch.utils.data import Dataset, DataLoader
from torch.utils.data.sampler import Sampler
from torchvision import transforms
import time
from params import par
from helper import normalize_angle_delta


def get_data_info(folder_list, seq_len_range, overlap, sample_times=1, pad_y=False, shuffle=False, sort=True):
    X_path, Y = [], []
    X_len = []
    for folder in folder_list:
        start_t = time.time()
        poses = np.load('{}{}.npy'.format(par.pose_dir, folder))  # (n_images, 6)
        fpaths = glob.glob('{}{}/image_3/*.png'.format(par.image_dir, folder))
        fpaths.sort()
        print (fpaths)
        # Fixed seq_len
        if seq_len_range[0] == seq_len_range[1]:
            print("inside first")
            if sample_times > 1:
                sample_interval = int(np.ceil(seq_len_range[0] / sample_times))
                start_frames = list(range(0, seq_len_range[0], sample_interval))
                print('Sample start from frame {}'.format(start_frames))
            else:
                start_frames = [0]

            for st in start_frames:
                seq_len = seq_len_range[0]
                n_frames = len(fpaths) - st
                jump = seq_len - overlap
                res = n_frames % seq_len
                if res != 0:
                    n_frames = n_frames - res
                x_segs = [fpaths[i:i+seq_len] for i in range(st, n_frames, jump)]
                y_segs = [poses[i:i+seq_len] for i in range(st, n_frames, jump)]
                Y += y_segs
                X_path += x_segs
                X_len += [len(xs) for xs in x_segs]
        # Random segment to sequences with diff lengths
        else:
            assert(overlap < min(seq_len_range))
            n_frames = len(fpaths)
            min_len, max_len = seq_len_range[0], seq_len_range[1]
            for i in range(sample_times):
                start = 0
                while True:
                    n = np.random.random_integers(min_len, max_len)
                    if start + n < n_frames:
                        x_seg = fpaths[start:start+n] 
                        X_path.append(x_seg)
                        print("lennnn: ", len(X_path))
                        if not pad_y:
                            Y.append(poses[start:start+n])
                        else:
                            pad_zero = np.zeros((max_len-n, 15))
                            padded = np.concatenate((poses[start:start+n], pad_zero))
                            Y.append(padded.tolist())
                    else:
                        print('Last %d frames is not used' %(start+n-n_frames))
                        break
                    start += n - overlap
                    X_len.append(len(x_seg))
        print('Folder {} finish in {} sec'.format(folder, time.time()-start_t))
    
    # Convert to pandas dataframes
    data = {'seq_len': X_len, 'image_path': X_path, 'pose': Y}
    #print("within dictionary: length ", data[seq_len])
    df = pd.DataFrame(data, columns = ['seq_len', 'image_path', 'pose'])
    # Shuffle through all videos
    if shuffle:
        df = df.sample(frac=1)
    # Sort dataframe by seq_len
    if sort:
        df = df.sort_values(by=['seq_len'], ascending=False)
    return df


def get_partition_data_info(partition, folder_list, seq_len_range, overlap, sample_times=1, pad_y=False, shuffle=False, sort=True):
    X_path = [[], []]
    Y = [[], []]
    X_len = [[], []]
    df_list = []

    #do till images of the folder get over. repeat it for number of sample time, the seq would be diff since seq length is randomly chosen 
    # between 5 and 7. do this for each folder of images. if partition is not None, this is done for both trg and validn. but here partition=None 
    for part in range(2):
        for folder in folder_list:
            start_t = time.time()
            poses = np.load('{}{}.npy'.format(par.pose_dir, folder))  # (n_images, 6)
            fpaths = glob.glob('{}{}/*.png'.format(par.image_dir, folder))
            fpaths.sort()


            # Get the middle section as validation set
            n_val = int((1-partition)*len(fpaths))
            st_val = int((len(fpaths)-n_val)/2)
            ed_val = st_val + n_val
            print('st_val: {}, ed_val:{}'.format(st_val, ed_val))
            if part == 1:
                fpaths = fpaths[st_val:ed_val]
                poses = poses[st_val:ed_val]
            else:
                fpaths = fpaths[:st_val] + fpaths[ed_val:]
                poses = np.concatenate((poses[:st_val], poses[ed_val:]), axis=0)

            # Random Segment
            assert(overlap < min(seq_len_range))
            n_frames = len(fpaths)
            min_len, max_len = seq_len_range[0], seq_len_range[1]
            for i in range(sample_times):
                start = 0
                while True:
                    n = np.random.random_integers(min_len, max_len)
                    if start + n < n_frames:
                        x_seg = fpaths[start:start+n] 
                        X_path[part].append(x_seg)
                        if not pad_y:
                            Y[part].append(poses[start:start+n])
                        else:
                            pad_zero = np.zeros((max_len-n, 6))
                            padded = np.concatenate((poses[start:start+n], pad_zero))
                            Y[part].append(padded.tolist())
                    else:
                        print('Last %d frames is not used' %(start+n-n_frames))
                        break
                    start += n - overlap
                    X_len[part].append(len(x_seg))
            print('Folder {} finish in {} sec'.format(folder, time.time()-start_t))
        
        # Convert to pandas dataframes
        data = {'seq_len': X_len[part], 'image_path': X_path[part], 'pose': Y[part]}
        df = pd.DataFrame(data, columns = ['seq_len', 'image_path', 'pose'])
        # Shuffle through all videos
        if shuffle:
            df = df.sample(frac=1)
        # Sort dataframe by seq_len
        if sort:
            df = df.sort_values(by=['seq_len'], ascending=False)
        df_list.append(df)
    return df_list


class SortedRandomBatchSampler(Sampler):
    def __init__(self, info_dataframe, batch_size, drop_last=False):
        self.df = info_dataframe
        self.batch_size = batch_size
        self.drop_last = drop_last
        #unique_seq_lens will contain any combination of 5,6,7 like just 5/5,6/5,6,7/6/6,7/...
        self.unique_seq_lens = sorted(self.df.iloc[:].seq_len.unique(), reverse=True)
        # Calculate len (num of batches, not num of samples)
        self.len = 0
        for v in self.unique_seq_lens:
            n_sample = len(self.df.loc[self.df.seq_len == v])
            n_batch = int(n_sample / self.batch_size)
            if not self.drop_last and n_sample % self.batch_size != 0:
                n_batch += 1
            self.len += n_batch

    def __iter__(self):
        
        # Calculate number of sameples in each group (grouped by seq_len)
        list_batch_indexes = []
        start_idx = 0
        for v in self.unique_seq_lens:
            n_sample = len(self.df.loc[self.df.seq_len == v])
            n_batch = int(n_sample / self.batch_size)
            if not self.drop_last and n_sample % self.batch_size != 0:
                n_batch += 1
            rand_idxs = (start_idx + torch.randperm(n_sample)).tolist()
            tmp = [rand_idxs[s*self.batch_size: s*self.batch_size+self.batch_size] for s in range(0, n_batch)]
            list_batch_indexes += tmp
            start_idx += n_sample
        return iter(list_batch_indexes)

    def __len__(self):
        return self.len


class ImageSequenceDataset(Dataset):
    def __init__(self, info_dataframe, resize_mode='crop', new_sizeize=None, img_mean=None, img_std=(1,1,1), minus_point_5=False):
        # Transforms
        transform_ops = []
        if resize_mode == 'crop':
            transform_ops.append(transforms.CenterCrop((new_sizeize[0], new_sizeize[1])))
        elif resize_mode == 'rescale':
            transform_ops.append(transforms.Resize((new_sizeize[0], new_sizeize[1])))
        transform_ops.append(transforms.ToTensor())
        #transform_ops.append(transforms.Normalize(mean=img_mean, std=img_std))
        self.transformer = transforms.Compose(transform_ops)
        self.minus_point_5 = minus_point_5
        self.normalizer = transforms.Normalize(mean=img_mean, std=img_std)
        
        self.data_info = info_dataframe
        self.seq_len_list = list(self.data_info.seq_len)
        self.image_arr = np.asarray(self.data_info.image_path)  # image paths
        print ("shape of poses: ", self.data_info.pose.shape)
        self.groundtruth_arr = np.asarray(self.data_info.pose)

    def __getitem__(self, index):
        raw_groundtruth = np.hsplit(self.groundtruth_arr[index], np.array([6]))
        print ("grndtruth_arr[index] ",self.groundtruth_arr[index])
        print ("raw grndtruth: ")
        print (raw_groundtruth)
        print ("index: ",index)
        print ("shape : ",raw_groundtruth[0].shape) 
        
        print ("")
        print ("test: ",raw_groundtruth[0][1])
        groundtruth_sequence = raw_groundtruth[0]
        groundtruth_rotation = raw_groundtruth[1][0].reshape((3, 3)).T # opposite rotation of the first frame
        groundtruth_sequence = torch.FloatTensor(groundtruth_sequence)
        # groundtruth_sequence[1:] = groundtruth_sequence[1:] - groundtruth_sequence[0:-1]  # get relative pose w.r.t. previois frame 

        groundtruth_sequence[1:] = groundtruth_sequence[1:] - groundtruth_sequence[0] # get relative pose w.r.t. the first frame in the sequence 
		
        # print('Item before transform: ' + str(index) + '   ' + str(groundtruth_sequence))

        # here we rotate the sequence relative to the first frame
        for gt_seq in groundtruth_sequence[1:]:
            location = torch.FloatTensor(groundtruth_rotation.dot(gt_seq[3:].numpy()))
            gt_seq[3:] = location[:]
            # print(location)

        # get relative pose w.r.t. previous frame
        groundtruth_sequence[2:] = groundtruth_sequence[2:] - groundtruth_sequence[1:-1]

		# here we consider cases when rotation angles over Y axis go through PI -PI discontinuity
        for gt_seq in groundtruth_sequence[1:]:
            gt_seq[0] = normalize_angle_delta(gt_seq[0])
			
        # print('Item after transform: ' + str(index) + '   ' + str(groundtruth_sequence))

        image_path_sequence = self.image_arr[index]
        sequence_len = torch.tensor(self.seq_len_list[index])  #sequence_len = torch.tensor(len(image_path_sequence))
        
        image_sequence = []
        for img_path in image_path_sequence:
            img_as_img = Image.open(img_path)
            img_as_tensor = self.transformer(img_as_img)
            if self.minus_point_5:
                img_as_tensor = img_as_tensor - 0.5  # from [0, 1] -> [-0.5, 0.5]
            img_as_tensor = self.normalizer(img_as_tensor)
            img_as_tensor = img_as_tensor.unsqueeze(0)
            image_sequence.append(img_as_tensor)
        image_sequence = torch.cat(image_sequence, 0)
        return (sequence_len, image_sequence, groundtruth_sequence)

    def __len__(self):
        return len(self.data_info.index)



# Example of usage
if __name__ == '__main__':
    start_t = time.time()
    # Gernerate info dataframe
    overlap = 1
    sample_times = 1
    folder_list = ['00']
    seq_len_range = [5, 7]
    df = get_data_info(folder_list, seq_len_range, overlap, sample_times)
    print('Elapsed Time (get_data_info): {} sec'.format(time.time()-start_t))
    # Customized Dataset, Sampler
    n_workers = 4
    resize_mode = 'crop'
    new_size = (150, 600)
    img_mean = (-0.14968217427134656, -0.12941663107068363, -0.1320610301921484)
    dataset = ImageSequenceDataset(df, resize_mode, new_size, img_mean)
    sorted_sampler = SortedRandomBatchSampler(df, batch_size=4, drop_last=True)
    dataloader = DataLoader(dataset, batch_sampler=sorted_sampler, num_workers=n_workers)
    print('Elapsed Time (dataloader): {} sec'.format(time.time()-start_t))

    for batch in dataloader:
        s, x, y = batch
        print('='*50)
        print('len:{}\nx:{}\ny:{}'.format(s, x.shape, y.shape))
    
    print('Elapsed Time: {} sec'.format(time.time()-start_t))
    print('Number of workers = ', n_workers)