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environment.yml
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environment.yml
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name: wsissl
channels:
- pyg
- pytorch
- nvidia
- anaconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- appdirs=1.4.4=pyh9f0ad1d_0
- blas=1.0=mkl
- bottleneck=1.3.5=py310ha9d4c09_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py310h5764c6d_1005
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2022.12.7=ha878542_0
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py310h255011f_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- cloudpickle=2.2.1=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- contourpy=1.0.7=py310hdf3cbec_0
- cryptography=38.0.4=py310h597c629_0
- cuda=11.6.1=0
- cuda-cccl=11.6.55=hf6102b2_0
- cuda-command-line-tools=11.6.2=0
- cuda-compiler=11.6.2=0
- cuda-cudart=11.6.55=he381448_0
- cuda-cudart-dev=11.6.55=h42ad0f4_0
- cuda-cuobjdump=11.6.124=h2eeebcb_0
- cuda-cupti=11.6.124=h86345e5_0
- cuda-cuxxfilt=11.6.124=hecbf4f6_0
- cuda-driver-dev=11.6.55=0
- cuda-gdb=12.0.140=0
- cuda-libraries=11.6.1=0
- cuda-libraries-dev=11.6.1=0
- cuda-memcheck=11.8.86=0
- cuda-nsight=12.0.140=0
- cuda-nsight-compute=12.0.1=0
- cuda-nvcc=11.6.124=hbba6d2d_0
- cuda-nvdisasm=12.0.140=0
- cuda-nvml-dev=11.6.55=haa9ef22_0
- cuda-nvprof=12.0.146=0
- cuda-nvprune=11.6.124=he22ec0a_0
- cuda-nvrtc=11.6.124=h020bade_0
- cuda-nvrtc-dev=11.6.124=h249d397_0
- cuda-nvtx=11.6.124=h0630a44_0
- cuda-nvvp=12.0.146=0
- cuda-runtime=11.6.1=0
- cuda-samples=11.6.101=h8efea70_0
- cuda-sanitizer-api=12.0.140=0
- cuda-toolkit=11.6.1=0
- cuda-tools=11.6.1=0
- cuda-visual-tools=11.6.1=0
- cycler=0.11.0=pyhd8ed1ab_0
- dbus=1.13.18=hb2f20db_0
- docker-pycreds=0.4.0=py_0
- expat=2.5.0=h27087fc_0
- ffmpeg=4.3=hf484d3e_0
- fftw=3.3.10=nompi_hf0379b8_106
- fontconfig=2.14.1=h52c9d5c_1
- fonttools=4.39.2=py310h1fa729e_0
- freetype=2.12.1=hca18f0e_1
- gds-tools=1.5.1.14=0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h0b41bf4_3
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.31=pyhd8ed1ab_0
- glib=2.74.1=h6239696_1
- glib-tools=2.74.1=h6239696_1
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- icu=58.2=hf484d3e_1000
- idna=3.4=pyhd8ed1ab_0
- intel-openmp=2021.4.0=h06a4308_3561
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.19.3=h3790be6_0
- lame=3.100=h166bdaf_1003
- lcms2=2.14=hfd0df8a_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libclang=10.0.1=default_hb85057a_2
- libcublas=11.9.2.110=h5e84587_0
- libcublas-dev=11.9.2.110=h5c901ab_0
- libcufft=10.7.1.112=hf425ae0_0
- libcufft-dev=10.7.1.112=ha5ce4c0_0
- libcufile=1.5.1.14=0
- libcufile-dev=1.5.1.14=0
- libcurand=10.3.1.124=0
- libcurand-dev=10.3.1.124=0
- libcusolver=11.3.4.124=h33c3c4e_0
- libcusparse=11.7.2.124=h7538f96_0
- libcusparse-dev=11.7.2.124=hbbe9722_0
- libdeflate=1.17=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libevent=2.1.12=h8f2d780_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libllvm10=10.0.1=he513fc3_3
- libnpp=11.6.3.124=hd2722f0_0
- libnpp-dev=11.6.3.124=h3c42840_0
- libnsl=2.0.0=h7f98852_0
- libnvjpeg=11.6.2.124=hd473ad6_0
- libnvjpeg-dev=11.6.2.124=hb5906b9_0
- libpng=1.6.39=h753d276_0
- libpq=12.9=h16c4e8d_3
- libprotobuf=3.21.12=h3eb15da_0
- libsqlite=3.40.0=h753d276_0
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=h6adf6a1_2
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.2.4=h1daa5a0_1
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=hfa300c1_0
- libxml2=2.9.14=h74e7548_0
- libxslt=1.1.35=h4e12654_0
- libzlib=1.2.13=h166bdaf_4
- markupsafe=2.1.2=py310h1fa729e_0
- matplotlib=3.7.1=py310hff52083_0
- matplotlib-base=3.7.1=py310he60537e_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py310ha2c4b55_0
- mkl_fft=1.3.1=py310h2b4bcf5_1
- mkl_random=1.2.2=py310h00e6091_0
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.3=h27087fc_1
- nettle=3.6=he412f7d_0
- nsight-compute=2022.4.1.6=0
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numexpr=2.8.4=py310h8879344_0
- numpy=1.23.5=py310hd5efca6_0
- numpy-base=1.23.5=py310h8e6c178_0
- openh264=2.1.1=h780b84a_0
- openjpeg=2.5.0=hfec8fc6_2
- openssl=1.1.1t=h0b41bf4_0
- pandas=1.5.2=py310h1128e8f_0
- pathtools=0.1.2=py_1
- pcre2=10.40=hc3806b6_0
- pillow=9.4.0=py310h6a678d5_0
- pip=23.0=pyhd8ed1ab_0
- ply=3.11=py_1
- pooch=1.6.0=pyhd8ed1ab_0
- protobuf=4.21.12=py310heca2aa9_0
- psutil=5.9.4=py310h5764c6d_0
- pthread-stubs=0.4=h36c2ea0_1001
- pycparser=2.21=pyhd8ed1ab_0
- pyg=2.2.0=py310_torch_1.13.0_cu116
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py310h6a678d5_1
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.9=h7a1cb2a_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.10=2_cp310
- pytorch=1.13.1=py3.10_cuda11.6_cudnn8.3.2_0
- pytorch-cluster=1.6.0=py310_torch_1.13.0_cu116
- pytorch-cuda=11.6=h867d48c_1
- pytorch-mutex=1.0=cuda
- pytorch-scatter=2.1.0=py310_torch_1.13.0_cu116
- pytorch-sparse=0.6.15=py310_torch_1.13.0_cu116
- pytz=2022.7=py310h06a4308_0
- pyyaml=6.0=py310h5764c6d_5
- qt-main=5.15.2=h327a75a_7
- qt-webengine=5.15.9=hd2b0992_4
- qtwebkit=5.212=h4eab89a_4
- readline=8.1.2=h0f457ee_0
- requests=2.28.2=pyhd8ed1ab_0
- scikit-learn=1.2.0=py310h6a678d5_0
- scipy=1.10.0=py310hd5efca6_0
- sentry-sdk=1.15.0=pyhd8ed1ab_0
- setproctitle=1.3.2=py310h5764c6d_1
- setuptools=67.3.2=pyhd8ed1ab_0
- sip=6.6.2=py310hd8f1fbe_0
- six=1.16.0=pyh6c4a22f_0
- smmap=3.0.5=pyh44b312d_0
- sqlite=3.40.1=h5082296_0
- submitit=1.2.1=pyh44b312d_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- torchaudio=0.13.1=py310_cu116
- torchvision=0.14.1=py310_cu116
- tornado=6.2=py310h5764c6d_1
- tqdm=4.64.1=pyhd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022g=h191b570_0
- unicodedata2=15.0.0=py310h5764c6d_0
- urllib3=1.26.14=pyhd8ed1ab_0
- wandb=0.13.10=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.10=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h3eb15da_6
- pip:
- einops==0.6.1
- filelock==3.9.0
- geojson==3.0.1
- huggingface-hub==0.12.1
- imageio==2.25.1
- lxml==4.9.2
- networkx==3.0
- numpyencoder==0.3.0
- nystrom-attention==0.0.11
- opencv-python==4.7.0.72
- openslide-python==1.2.0
- packaging==23.0
- pyqt5-sip==12.11.0
- python-docx==0.8.11
- pywavelets==1.4.1
- scikit-image==0.19.3
- tifffile==2023.2.3
- timm==0.6.12
- torchsummary==1.5.1
- wsiprocess==0.9