diff --git a/.github/workflows/run_periodic_tests.yml b/.github/workflows/run_periodic_tests.yml
index f6e51bc11b..06c0f0fb68 100644
--- a/.github/workflows/run_periodic_tests.yml
+++ b/.github/workflows/run_periodic_tests.yml
@@ -66,19 +66,11 @@ jobs:
           sudo apt install gfortran gcc libopenblas-dev graphviz pandoc
           sudo apt install texlive-full
 
-      # Added fixes to homebrew installs:
-      # rm -f /usr/local/bin/2to3
-      # (see https://github.com/actions/virtual-environments/issues/2322)
-      - name: Install MacOS system dependencies
+      - name: Install macOS system dependencies
         if: matrix.os == 'macos-latest'
-        run: |
-          rm -f /usr/local/bin/2to3*
-          rm -f /usr/local/bin/idle3*
-          rm -f /usr/local/bin/pydoc3*
-          rm -f /usr/local/bin/python3*
-          brew update
-          brew install graphviz
-          brew install openblas
+        run:
+          brew install graphviz openblas
+          brew reinstall gcc
 
       - name: Install Windows system dependencies
         if: matrix.os == 'windows-latest'
@@ -86,42 +78,42 @@ jobs:
 
       - name: Install standard Python dependencies
         run: |
-          python -m pip install --upgrade pip wheel setuptools
+          python -m pip install --upgrade pip wheel setuptools nox
 
       - name: Install SuiteSparse and SUNDIALS on GNU/Linux
         if: matrix.os == 'ubuntu-latest'
-        run: pipx run nox -s pybamm-requires
+        run: python -m nox -s pybamm-requires
 
       - name: Run unit tests for GNU/Linux with Python 3.8, 3.9, and 3.10, and for macOS and Windows with all Python versions
         if: (matrix.os == 'ubuntu-latest' && matrix.python-version != 3.11) || (matrix.os != 'ubuntu-latest')
-        run: pipx run nox -s unit
+        run: python -m nox -s unit
 
       - name: Run unit tests for GNU/Linux with Python 3.11 and generate coverage report
         if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.11
-        run: pipx run nox -s coverage
+        run: python -m nox -s coverage
 
       - name: Upload coverage report
         if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.11
         uses: codecov/codecov-action@v3.1.4
 
       - name: Run integration tests
-        run: pipx run nox -s integration
+        run: python -m nox -s integration
 
       - name: Install docs dependencies and run doctests
         if: matrix.os == 'ubuntu-latest'
-        run: pipx run nox -s doctests
+        run: python -m nox -s doctests
 
       - name: Check if the documentation can be built
         if: matrix.os == 'ubuntu-latest'
-        run: pipx run nox -s docs
+        run: python -m nox -s docs
 
       - name: Install dev dependencies and run example tests
         if: matrix.os == 'ubuntu-latest'
-        run: pipx run nox -s examples
+        run: python -m nox -s examples
 
       - name: Run example scripts tests
         if: matrix.os == 'ubuntu-latest'
-        run: pipx run nox -s scripts
+        run: python -m nox -s scripts
 
   #M-series Mac Mini
   build-apple-mseries:
diff --git a/.github/workflows/test_on_push.yml b/.github/workflows/test_on_push.yml
index db71c32586..f007b38e33 100644
--- a/.github/workflows/test_on_push.yml
+++ b/.github/workflows/test_on_push.yml
@@ -75,7 +75,6 @@ jobs:
           NONINTERACTIVE: 1
         run: |
           brew analytics off
-          brew update
           brew install graphviz openblas
 
       - name: Install Windows system dependencies
@@ -90,10 +89,9 @@ jobs:
           cache: 'pip'
           cache-dependency-path: setup.py
 
-      - name: Install PyBaMM dependencies
+      - name: Install standard Python dependencies
         run: |
-          pip install --upgrade pip wheel setuptools
-          pip install -e .[all,docs]
+          pip install --upgrade pip wheel setuptools nox
 
       - name: Cache pybamm-requires nox environment for GNU/Linux
         uses: actions/cache@v3
@@ -111,10 +109,10 @@ jobs:
 
       - name: Install SuiteSparse and SUNDIALS on GNU/Linux
         if: matrix.os == 'ubuntu-latest'
-        run: pipx run nox -s pybamm-requires
+        run: python -m nox -s pybamm-requires
 
       - name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        run: pipx run nox -s unit
+        run: python -m nox -s unit
 
   # Runs only on Ubuntu with Python 3.11
   check_coverage:
@@ -150,10 +148,9 @@ jobs:
           cache: 'pip'
           cache-dependency-path: setup.py
 
-      - name: Install PyBaMM dependencies
+      - name: Install standard Python dependencies
         run: |
           pip install --upgrade pip wheel setuptools nox
-          pip install -e .[all,docs]
 
       - name: Cache pybamm-requires nox environment for GNU/Linux
         uses: actions/cache@v3
@@ -169,10 +166,10 @@ jobs:
           key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }}
 
       - name: Install SuiteSparse and SUNDIALS on GNU/Linux
-        run: pipx run nox -s pybamm-requires
+        run: python -m nox -s pybamm-requires
 
       - name: Run unit tests for Ubuntu with Python 3.11 and generate coverage report
-        run: pipx run nox -s coverage
+        run: python -m nox -s coverage
 
       - name: Upload coverage report
         uses: codecov/codecov-action@v3.1.4
@@ -218,7 +215,6 @@ jobs:
           NONINTERACTIVE: 1
         run: |
           brew analytics off
-          brew update
           brew install graphviz openblas
 
       - name: Install Windows system dependencies
@@ -233,10 +229,9 @@ jobs:
           cache: 'pip'
           cache-dependency-path: setup.py
 
-      - name: Install PyBaMM dependencies
+      - name: Install standard Python dependencies
         run: |
-          pip install --upgrade pip wheel setuptools
-          pip install -e .[all,docs]
+          pip install --upgrade pip wheel setuptools nox
 
       - name: Cache pybamm-requires nox environment for GNU/Linux
         uses: actions/cache@v3
@@ -254,10 +249,10 @@ jobs:
 
       - name: Install SuiteSparse and SUNDIALS on GNU/Linux
         if: matrix.os == 'ubuntu-latest'
-        run: pipx run nox -s pybamm-requires
+        run: python -m nox -s pybamm-requires
 
       - name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
-        run: pipx run nox -s integration
+        run: python -m nox -s integration
 
 # Runs only on Ubuntu with Python 3.11. Skips IDAKLU module compilation
 # for speedups, which is already tested in other jobs.
@@ -294,16 +289,15 @@ jobs:
           cache: 'pip'
           cache-dependency-path: setup.py
 
-      - name: Install PyBaMM dependencies
+      - name: Install standard Python dependencies
         run: |
-          pip install --upgrade pip wheel setuptools
-          pip install -e .[all,docs]
+          pip install --upgrade pip wheel setuptools nox
 
       - name: Install docs dependencies and run doctests for GNU/Linux with Python 3.11
-        run: pipx run nox -s doctests
+        run: python -m nox -s doctests
 
       - name: Check if the documentation can be built for GNU/Linux with Python 3.11
-        run: pipx run nox -s docs
+        run: python -m nox -s docs
 
   # Runs only on Ubuntu with Python 3.11
   run_example_tests:
@@ -339,10 +333,9 @@ jobs:
           cache: 'pip'
           cache-dependency-path: setup.py
 
-      - name: Install PyBaMM dependencies
+      - name: Install standard Python dependencies
         run: |
-          pip install --upgrade pip wheel setuptools
-          pip install -e .[all,docs]
+          pip install --upgrade pip wheel setuptools nox
 
       - name: Cache pybamm-requires nox environment for GNU/Linux
         uses: actions/cache@v3
@@ -358,10 +351,10 @@ jobs:
           key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }}
 
       - name: Install SuiteSparse and SUNDIALS on GNU/Linux
-        run: pipx run nox -s pybamm-requires
+        run: python -m nox -s pybamm-requires
 
       - name: Install dev dependencies and run example tests for GNU/Linux with Python 3.11
-        run: pipx run nox -s examples
+        run: python -m nox -s examples
 
   # Runs only on Ubuntu with Python 3.11
   run_scripts_tests:
@@ -397,10 +390,9 @@ jobs:
           cache: 'pip'
           cache-dependency-path: setup.py
 
-      - name: Install PyBaMM dependencies
+      - name: Install standard Python dependencies
         run: |
-          pip install --upgrade pip wheel setuptools
-          pip install -e .[all,docs]
+          pip install --upgrade pip wheel setuptools nox
 
       - name: Cache pybamm-requires nox environment for GNU/Linux
         uses: actions/cache@v3
@@ -416,7 +408,7 @@ jobs:
           key: nox-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py') }}
 
       - name: Install SuiteSparse and SUNDIALS on GNU/Linux
-        run: pipx run nox -s pybamm-requires
+        run: python -m nox -s pybamm-requires
 
       - name: Install dev dependencies and run example scripts tests for GNU/Linux with Python 3.11
-        run: pipx run nox -s scripts
+        run: python -m nox -s scripts
diff --git a/setup.py b/setup.py
index fca5b83de8..886378f44f 100644
--- a/setup.py
+++ b/setup.py
@@ -203,11 +203,11 @@ def compile_KLU():
     ],
     # List of dependencies
     install_requires=[
-        "numpy>=1.16",
-        "scipy>=1.3",
-        "casadi>=3.6.0",
-        "xarray",
-        "anytree>=2.4.3",
+        "numpy>=1.23.5",
+        "scipy>=1.9.3",
+        "casadi>=3.6.3",
+        "xarray>=2022.6.0",
+        "anytree>=2.12.0",
     ],
     extras_require={
         "docs": [
@@ -231,18 +231,18 @@ def compile_KLU():
             "jupyter",  # For example notebooks
         ],
         "plot": [
-            "imageio>=2.9.0",
+            "imageio>=2.32.0",
             # Note: Matplotlib is loaded for debug plots, but to ensure pybamm runs
             # on systems without an attached display, it should never be imported
             # outside of plot() methods.
             # Should not be imported
-            "matplotlib>=2.0",
+            "matplotlib>=3.6.0",
         ],
         "cite": [
             "pybtex>=0.24.0",
         ],
         "latexify": [
-            "sympy>=1.8",
+            "sympy>=1.12",
         ],
         "bpx": [
             "bpx",
@@ -263,7 +263,7 @@ def compile_KLU():
             "nbmake",
         ],
         "pandas": [
-            "pandas>=0.24",
+            "pandas>=1.5.0",
         ],
         "jax": [
             "jax==0.4.8",
@@ -271,17 +271,9 @@ def compile_KLU():
         ],
         "odes": ["scikits.odes"],
         "all": [
-            "anytree>=2.4.3",
-            "autograd>=1.2",
-            "pandas>=0.24",
-            "scikit-fem>=0.2.0",
-            "imageio>=2.9.0",
-            "pybtex>=0.24.0",
-            "sympy>=1.8",
-            "bpx",
-            "tqdm",
-            "matplotlib>=2.0",
-            "jupyter",
+            "autograd>=1.6.2",
+            "scikit-fem>=8.1.0",
+            "pybamm[examples,plot,cite,latexify,bpx,tqdm,pandas]"
         ],
     },
     entry_points={