From 609dea61139e408ebac19cb01d53393cb0c92ca2 Mon Sep 17 00:00:00 2001
From: Agriya Khetarpal <74401230+agriyakhetarpal@users.noreply.github.com>
Date: Mon, 3 Jun 2024 17:21:28 +0530
Subject: [PATCH] Run `conda init` before `conda activate`

---
 .github/workflows/publish_pypi.yml | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/publish_pypi.yml b/.github/workflows/publish_pypi.yml
index edf2b65f21..2454fc4631 100644
--- a/.github/workflows/publish_pypi.yml
+++ b/.github/workflows/publish_pypi.yml
@@ -168,10 +168,11 @@ jobs:
           output-dir: wheelhouse
         env:
           CIBW_BEFORE_ALL: |
+            conda init
             conda activate pybamm-dev
-            export CC=$(conda run -n pybamm-dev which clang)
-            export CXX=$(conda run -n pybamm-dev which clang++)
-            export FC=$(conda run -n pybamm-dev which gfortran)
+            # export CC=$(conda run -n pybamm-dev which clang)
+            # export CXX=$(conda run -n pybamm-dev which clang++)
+            # export FC=$(conda run -n pybamm-dev which gfortran)
             python -m pip install cmake pipx
             python scripts/install_KLU_Sundials.py
           CIBW_ARCHS_MACOS: auto