Import data - References - Add fasta file - Broken fai file

[pblumenkamp]

Where: Import data - References - Add fasta file
Condition: New database; Fasta is first entry
Test file: test.fa.zip

During Import of fasta file, this exception was thrown:

htsjdk.samtools.SAMException: Found invalid line in index file:	168	46	168	169
	at htsjdk.samtools.reference.FastaSequenceIndex.parseIndexFile(FastaSequenceIndex.java:155)
	at htsjdk.samtools.reference.FastaSequenceIndex.<init>(FastaSequenceIndex.java:72)
	at htsjdk.samtools.reference.IndexedFastaSequenceFile.<init>(IndexedFastaSequenceFile.java:71)
	at de.cebitec.readxplorer.databackend.SaveFileFetcherForGUI.checkRefFile(SaveFileFetcherForGUI.java:424)
	at de.cebitec.readxplorer.databackend.dataobjects.PersistentReference.checkRef(PersistentReference.java:138)
	at de.cebitec.readxplorer.databackend.dataobjects.PersistentReference.<init>(PersistentReference.java:124)
	at de.cebitec.readxplorer.databackend.dataobjects.PersistentReference.<init>(PersistentReference.java:94)
	at de.cebitec.readxplorer.databackend.dataobjects.PersistentReference.<init>(PersistentReference.java:77)
	at de.cebitec.readxplorer.databackend.connector.ProjectConnector.getReferences(ProjectConnector.java:1074)
	at de.cebitec.readxplorer.databackend.connector.ProjectConnector.getReferencesAndTracks(ProjectConnector.java:1171)
	at de.cebitec.readxplorer.dashboard.DashboardWindowTopComponent.refreshData(DashboardWindowTopComponent.java:187)
	at de.cebitec.readxplorer.dashboard.DashboardWindowTopComponent$1$1$1.run(DashboardWindowTopComponent.java:147)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
	at java.awt.EventQueue.access$500(EventQueue.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:709)
	at java.awt.EventQueue$3.run(EventQueue.java:703)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
	at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:136)
[catch] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Renaming the header solved the problem.

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Product Version: ReadXplorer 2.3
Java: 1.8.0_201; Java HotSpot(TM) 64-Bit Server VM 25.201-b09
Runtime: Java(TM) SE Runtime Environment 1.8.0_201-b09
System: Linux version 4.15.0-58-generic running on amd64; UTF-8; en_US (readxplorer)
User directory: /home/patrick/.readxplorer/dev
Cache directory: /home/patrick/.readxplorer/dev/var/cache