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The public motif collection PWMs for motifs-v9-nr #51

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QianzhaoJ opened this issue Aug 5, 2024 · 1 comment
Open

The public motif collection PWMs for motifs-v9-nr #51

QianzhaoJ opened this issue Aug 5, 2024 · 1 comment

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@QianzhaoJ
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QianzhaoJ commented Aug 5, 2024

Thanks for providing the SCENIC+ public motif collection PWMs , it is very helpful !

I noticed that the version of the motif collection is "V10: 2022 SCENIC+ clustered motif collection (v10nr_clust_public)". Could you provide the cisTarget motif collection in version mc9nr ? Because I found that there are many motifs can be found in motifs-v9-nr.hgnc-m0.001-o0.0.tbl but missing in motifs-v10nr_clust-nr.hgnc-m0.001-o0.0.tbl .

Thanks in advance!!

Best wishes
Qianzhao

@ghuls
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ghuls commented Aug 9, 2024

Some motifs were removed as they had wrong motif to TF annotations in the source motif collection.

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