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convert SCENIC+ public motif collection to HOMER format #42

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pchiang5 opened this issue Aug 14, 2023 · 1 comment
Open

convert SCENIC+ public motif collection to HOMER format #42

pchiang5 opened this issue Aug 14, 2023 · 1 comment

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@pchiang5
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Hello,

Can the database be converted to HOMER format with Log odds detection threshold? Thank you.

@ghuls
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ghuls commented Aug 16, 2023

Conversion to HOMER format with Log odds detection threshold is difficult. As far as I know, it would only be possible if you have access to the original sequences (positive and negative) used to make the original PWMs.

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