From 7e9688a671cfdd5d445dffbbd41610f2fabced26 Mon Sep 17 00:00:00 2001
From: Aditesh Kumar <akumar@toyon.com>
Date: Wed, 3 Apr 2024 18:52:26 -0700
Subject: [PATCH 1/2] fix: bump jax verstion to 0.4.26

---
 poetry.lock    | 2025 ++++++++++++++++++++++++++----------------------
 pyproject.toml |    2 +-
 2 files changed, 1112 insertions(+), 915 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 5136fe8..5885ec6 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
 
 [[package]]
 name = "aiohttp"
@@ -111,13 +111,24 @@ frozenlist = ">=1.1.0"
 
 [[package]]
 name = "alabaster"
-version = "0.7.13"
-description = "A configurable sidebar-enabled Sphinx theme"
+version = "0.7.16"
+description = "A light, configurable Sphinx theme"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.9"
+files = [
+    {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"},
+    {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"},
+]
+
+[[package]]
+name = "annotated-types"
+version = "0.6.0"
+description = "Reusable constraint types to use with typing.Annotated"
+optional = false
+python-versions = ">=3.8"
 files = [
-    {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"},
-    {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"},
+    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
+    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
 ]
 
 [[package]]
@@ -135,8 +146,8 @@ files = [
 lazy-object-proxy = ">=1.4.0"
 typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
 wrapt = [
-    {version = ">=1.11,<2", markers = "python_version < \"3.11\""},
     {version = ">=1.14,<2", markers = "python_version >= \"3.11\""},
+    {version = ">=1.11,<2", markers = "python_version < \"3.11\""},
 ]
 
 [[package]]
@@ -188,51 +199,54 @@ pbr = ">=2.0.0,<2.1.0 || >2.1.0"
 
 [[package]]
 name = "beautifulsoup4"
-version = "4.12.2"
+version = "4.12.3"
 description = "Screen-scraping library"
 optional = false
 python-versions = ">=3.6.0"
 files = [
-    {file = "beautifulsoup4-4.12.2-py3-none-any.whl", hash = "sha256:bd2520ca0d9d7d12694a53d44ac482d181b4ec1888909b035a3dbf40d0f57d4a"},
-    {file = "beautifulsoup4-4.12.2.tar.gz", hash = "sha256:492bbc69dca35d12daac71c4db1bfff0c876c00ef4a2ffacce226d4638eb72da"},
+    {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"},
+    {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"},
 ]
 
 [package.dependencies]
 soupsieve = ">1.2"
 
 [package.extras]
+cchardet = ["cchardet"]
+chardet = ["chardet"]
+charset-normalizer = ["charset-normalizer"]
 html5lib = ["html5lib"]
 lxml = ["lxml"]
 
 [[package]]
 name = "black"
-version = "23.12.1"
+version = "24.3.0"
 description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -397,13 +411,13 @@ cffi = ">=1.0.0"
 
 [[package]]
 name = "certifi"
-version = "2023.11.17"
+version = "2024.2.2"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"},
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+    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
+    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
 ]
 
 [[package]]
@@ -596,126 +610,126 @@ files = [
 
 [[package]]
 name = "contourpy"
-version = "1.2.0"
+version = "1.2.1"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
 python-versions = ">=3.9"
 files = [
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 [package.extras]
@@ -737,47 +751,56 @@ coverage = "*"
 
 [[package]]
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 [package.dependencies]
-cffi = ">=1.12"
+cffi = {version = ">=1.12", markers = "platform_python_implementation != \"PyPy\""}
 
 [package.extras]
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 nox = ["nox"]
-pep8test = ["black", "check-sdist", "mypy", "ruff"]
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 sdist = ["build"]
 ssh = ["bcrypt (>=3.1.5)"]
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 test-randomorder = ["pytest-randomly"]
 
 [[package]]
@@ -835,27 +858,28 @@ word-list = ["pyahocorasick"]
 
 [[package]]
 name = "dill"
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+version = "0.3.8"
 description = "serialize all of Python"
 optional = false
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 ]
 
 [package.extras]
 graph = ["objgraph (>=1.7.2)"]
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 [[package]]
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 [[package]]
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 [[package]]
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 ]
 
 [package.dependencies]
@@ -981,10 +1005,10 @@ brotlicffi = {version = ">=0.8.0", optional = true, markers = "platform_python_i
 zopfli = {version = ">=0.1.4", optional = true, markers = "extra == \"woff\""}
 
 [package.extras]
-all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "pycairo", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"]
+all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "pycairo", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"]
 graphite = ["lz4 (>=1.7.4.2)"]
 interpolatable = ["munkres", "pycairo", "scipy"]
-lxml = ["lxml (>=4.0,<5)"]
+lxml = ["lxml (>=4.0)"]
 pathops = ["skia-pathops (>=0.5.0)"]
 plot = ["matplotlib"]
 repacker = ["uharfbuzz (>=0.23.0)"]
@@ -1113,20 +1137,21 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.40"
+version = "3.1.43"
 description = "GitPython is a Python library used to interact with Git repositories"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "GitPython-3.1.40.tar.gz", hash = "sha256:22b126e9ffb671fdd0c129796343a02bf67bf2994b35449ffc9321aa755e18a4"},
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 ]
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
 
 [package.extras]
-test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-instafail", "pytest-subtests", "pytest-sugar"]
+doc = ["sphinx (==4.3.2)", "sphinx-autodoc-typehints", "sphinx-rtd-theme", "sphinxcontrib-applehelp (>=1.0.2,<=1.0.4)", "sphinxcontrib-devhelp (==1.0.2)", "sphinxcontrib-htmlhelp (>=2.0.0,<=2.0.1)", "sphinxcontrib-qthelp (==1.0.3)", "sphinxcontrib-serializinghtml (==1.1.5)"]
+test = ["coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy", "pre-commit", "pytest (>=7.3.1)", "pytest-cov", "pytest-instafail", "pytest-mock", "pytest-sugar", "typing-extensions"]
 
 [[package]]
 name = "html5lib"
@@ -1173,32 +1198,32 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "7.0.1"
+version = "7.1.0"
 description = "Read metadata from Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-7.0.1-py3-none-any.whl", hash = "sha256:4805911c3a4ec7c3966410053e9ec6a1fecd629117df5adee56dfc9432a1081e"},
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 ]
 
 [package.dependencies]
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-perf (>=0.9.2)", "pytest-ruff (>=0.2.1)"]
 
 [[package]]
 name = "importlib-resources"
-version = "6.1.1"
+version = "6.4.0"
 description = "Read resources from Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "importlib_resources-6.1.1-py3-none-any.whl", hash = "sha256:e8bf90d8213b486f428c9c39714b920041cb02c184686a3dee24905aaa8105d6"},
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+    {file = "importlib_resources-6.4.0-py3-none-any.whl", hash = "sha256:50d10f043df931902d4194ea07ec57960f66a80449ff867bfe782b4c486ba78c"},
+    {file = "importlib_resources-6.4.0.tar.gz", hash = "sha256:cdb2b453b8046ca4e3798eb1d84f3cce1446a0e8e7b5ef4efb600f19fc398145"},
 ]
 
 [package.dependencies]
@@ -1206,7 +1231,7 @@ zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff", "zipp (>=3.17)"]
+testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
 
 [[package]]
 name = "iniconfig"
@@ -1238,13 +1263,13 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"]
 
 [[package]]
 name = "jaraco-classes"
-version = "3.3.0"
+version = "3.4.0"
 description = "Utility functions for Python class constructs"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jaraco.classes-3.3.0-py3-none-any.whl", hash = "sha256:10afa92b6743f25c0cf5f37c6bb6e18e2c5bb84a16527ccfc0040ea377e7aaeb"},
-    {file = "jaraco.classes-3.3.0.tar.gz", hash = "sha256:c063dd08e89217cee02c8d5e5ec560f2c8ce6cdc2fcdc2e68f7b2e5547ed3621"},
+    {file = "jaraco.classes-3.4.0-py3-none-any.whl", hash = "sha256:f662826b6bed8cace05e7ff873ce0f9283b5c924470fe664fff1c2f00f581790"},
+    {file = "jaraco.classes-3.4.0.tar.gz", hash = "sha256:47a024b51d0239c0dd8c8540c6c7f484be3b8fcf0b2d85c13825780d3b3f3acd"},
 ]
 
 [package.dependencies]
@@ -1252,58 +1277,118 @@ more-itertools = "*"
 
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+
+[[package]]
+name = "jaraco-context"
+version = "5.1.0"
+description = "Useful decorators and context managers"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jaraco.context-5.1.0-py3-none-any.whl", hash = "sha256:0e4161ebbaeead78850b4ca5465b5853217cf23ad74ec82d00ebfb69d8ea5fcb"},
+    {file = "jaraco.context-5.1.0.tar.gz", hash = "sha256:24ec1f739aec2c5766c68027ccc70d91d7b0cb931699442f5c7ed93515b955e7"},
+]
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["pytest (>=6,!=8.1.1)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+
+[[package]]
+name = "jaraco-functools"
+version = "4.0.0"
+description = "Functools like those found in stdlib"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jaraco.functools-4.0.0-py3-none-any.whl", hash = "sha256:daf276ddf234bea897ef14f43c4e1bf9eefeac7b7a82a4dd69228ac20acff68d"},
+    {file = "jaraco.functools-4.0.0.tar.gz", hash = "sha256:c279cb24c93d694ef7270f970d499cab4d3813f4e08273f95398651a634f0925"},
+]
+
+[package.dependencies]
+more-itertools = "*"
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["jaraco.classes", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [[package]]
 name = "jax"
-version = "0.4.3"
+version = "0.4.26"
 description = "Differentiate, compile, and transform Numpy code."
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "jax-0.4.3.tar.gz", hash = "sha256:d43f08f940aa30eb339965cfb3d6bee2296537b0dc2f0c65ccae3009279529ae"},
+    {file = "jax-0.4.26-py3-none-any.whl", hash = "sha256:50dc795148ee6b0735b48b477e5abc556aa3a4c7af5d6940dad08024a908b02f"},
+    {file = "jax-0.4.26.tar.gz", hash = "sha256:2cce025d0a279ec630d550524749bc8efe25d2ff47240d2a7d4cfbc5090c5383"},
 ]
 
 [package.dependencies]
-jaxlib = {version = "0.4.3", optional = true, markers = "extra == \"cpu\""}
-numpy = ">=1.20"
-opt_einsum = "*"
-scipy = ">=1.5"
+importlib-metadata = {version = ">=4.6", markers = "python_version < \"3.10\""}
+jaxlib = {version = "0.4.26", optional = true, markers = "extra == \"cpu\""}
+ml-dtypes = ">=0.2.0"
+numpy = [
+    {version = ">=1.26.0", markers = "python_version >= \"3.12\""},
+    {version = ">=1.23.2", markers = "python_version >= \"3.11\" and python_version < \"3.12\""},
+    {version = ">=1.22", markers = "python_version < \"3.11\""},
+]
+opt-einsum = "*"
+scipy = [
+    {version = ">=1.11.1", markers = "python_version >= \"3.12\""},
+    {version = ">=1.9", markers = "python_version < \"3.12\""},
+]
 
 [package.extras]
 australis = ["protobuf (>=3.13,<4)"]
-ci = ["jaxlib (==0.4.2)"]
-cpu = ["jaxlib (==0.4.3)"]
-cuda = ["jaxlib (==0.4.3+cuda11.cudnn86)"]
-cuda11-cudnn82 = ["jaxlib (==0.4.3+cuda11.cudnn82)"]
-cuda11-cudnn86 = ["jaxlib (==0.4.3+cuda11.cudnn86)"]
-minimum-jaxlib = ["jaxlib (==0.4.2)"]
-tpu = ["jaxlib (==0.4.3)", "libtpu-nightly (==0.1.dev20230207)", "requests"]
+ci = ["jaxlib (==0.4.25)"]
+cpu = ["jaxlib (==0.4.26)"]
+cuda = ["jaxlib (==0.4.26+cuda12.cudnn89)"]
+cuda12 = ["jax-cuda12-plugin (==0.4.26)", "jaxlib (==0.4.26)", "nvidia-cublas-cu12 (>=12.1.3.1)", "nvidia-cuda-cupti-cu12 (>=12.1.105)", "nvidia-cuda-nvcc-cu12 (>=12.1.105)", "nvidia-cuda-runtime-cu12 (>=12.1.105)", "nvidia-cudnn-cu12 (>=8.9.2.26,<9.0)", "nvidia-cufft-cu12 (>=11.0.2.54)", "nvidia-cusolver-cu12 (>=11.4.5.107)", "nvidia-cusparse-cu12 (>=12.1.0.106)", "nvidia-nccl-cu12 (>=2.18.1)", "nvidia-nvjitlink-cu12 (>=12.1.105)"]
+cuda12-cudnn89 = ["jaxlib (==0.4.26+cuda12.cudnn89)"]
+cuda12-local = ["jaxlib (==0.4.26+cuda12.cudnn89)"]
+cuda12-pip = ["jaxlib (==0.4.26+cuda12.cudnn89)", "nvidia-cublas-cu12 (>=12.1.3.1)", "nvidia-cuda-cupti-cu12 (>=12.1.105)", "nvidia-cuda-nvcc-cu12 (>=12.1.105)", "nvidia-cuda-runtime-cu12 (>=12.1.105)", "nvidia-cudnn-cu12 (>=8.9.2.26,<9.0)", "nvidia-cufft-cu12 (>=11.0.2.54)", "nvidia-cusolver-cu12 (>=11.4.5.107)", "nvidia-cusparse-cu12 (>=12.1.0.106)", "nvidia-nccl-cu12 (>=2.18.1)", "nvidia-nvjitlink-cu12 (>=12.1.105)"]
+minimum-jaxlib = ["jaxlib (==0.4.20)"]
+tpu = ["jaxlib (==0.4.26)", "libtpu-nightly (==0.1.dev20240403)", "requests"]
 
 [[package]]
 name = "jaxlib"
-version = "0.4.3"
+version = "0.4.26"
 description = "XLA library for JAX"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
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+    {file = "jaxlib-0.4.26-cp39-cp39-manylinux2014_aarch64.whl", hash = "sha256:d7bbb75f8e63c5ada57a386b7bfaac301f689149ba132509ccd0c865b2ebd4d2"},
+    {file = "jaxlib-0.4.26-cp39-cp39-manylinux2014_x86_64.whl", hash = "sha256:80b2440072da25d85634e98f755b8381781bd4c1ab4023b2ae0956c360124080"},
+    {file = "jaxlib-0.4.26-cp39-cp39-win_amd64.whl", hash = "sha256:96c9a183d7a56572a5c1508de317a05badddfbbc8370a8fa8a2e548d5e059dc3"},
 ]
 
 [package.dependencies]
-numpy = ">=1.20"
-scipy = ">=1.5"
+ml-dtypes = ">=0.2.0"
+numpy = ">=1.22"
+scipy = [
+    {version = ">=1.11.1", markers = "python_version >= \"3.12\""},
+    {version = ">=1.9", markers = "python_version < \"3.12\""},
+]
+
+[package.extras]
+cuda12-pip = ["nvidia-cublas-cu12 (>=12.1.3.1)", "nvidia-cuda-cupti-cu12 (>=12.1.105)", "nvidia-cuda-nvcc-cu12 (>=12.1.105)", "nvidia-cuda-runtime-cu12 (>=12.1.105)", "nvidia-cudnn-cu12 (>=8.9.2.26,<9.0)", "nvidia-cufft-cu12 (>=11.0.2.54)", "nvidia-cusolver-cu12 (>=11.4.5.107)", "nvidia-cusparse-cu12 (>=12.1.0.106)", "nvidia-nccl-cu12 (>=2.18.1)", "nvidia-nvjitlink-cu12 (>=12.1.105)"]
 
 [[package]]
 name = "jeepney"
@@ -1322,13 +1407,13 @@ trio = ["async_generator", "trio"]
 
 [[package]]
 name = "jinja2"
-version = "3.1.2"
+version = "3.1.3"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "Jinja2-3.1.2-py3-none-any.whl", hash = "sha256:6088930bfe239f0e6710546ab9c19c9ef35e29792895fed6e6e31a023a182a61"},
-    {file = "Jinja2-3.1.2.tar.gz", hash = "sha256:31351a702a408a9e7595a8fc6150fc3f43bb6bf7e319770cbc0db9df9437e852"},
+    {file = "Jinja2-3.1.3-py3-none-any.whl", hash = "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa"},
+    {file = "Jinja2-3.1.3.tar.gz", hash = "sha256:ac8bd6544d4bb2c9792bf3a159e80bba8fda7f07e81bc3aed565432d5925ba90"},
 ]
 
 [package.dependencies]
@@ -1339,13 +1424,13 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "jsonschema"
-version = "4.20.0"
+version = "4.21.1"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jsonschema-4.20.0-py3-none-any.whl", hash = "sha256:ed6231f0429ecf966f5bc8dfef245998220549cbbcf140f913b7464c52c3b6b3"},
-    {file = "jsonschema-4.20.0.tar.gz", hash = "sha256:4f614fd46d8d61258610998997743ec5492a648b33cf478c1ddc23ed4598a5fa"},
+    {file = "jsonschema-4.21.1-py3-none-any.whl", hash = "sha256:7996507afae316306f9e2290407761157c6f78002dcf7419acb99822143d1c6f"},
+    {file = "jsonschema-4.21.1.tar.gz", hash = "sha256:85727c00279f5fa6bedbe6238d2aa6403bedd8b4864ab11207d07df3cc1b2ee5"},
 ]
 
 [package.dependencies]
@@ -1374,13 +1459,13 @@ referencing = ">=0.31.0"
 
 [[package]]
 name = "jupyter-client"
-version = "8.6.0"
+version = "8.6.1"
 description = "Jupyter protocol implementation and client libraries"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jupyter_client-8.6.0-py3-none-any.whl", hash = "sha256:909c474dbe62582ae62b758bca86d6518c85234bdee2d908c778db6d72f39d99"},
-    {file = "jupyter_client-8.6.0.tar.gz", hash = "sha256:0642244bb83b4764ae60d07e010e15f0e2d275ec4e918a8f7b80fbbef3ca60c7"},
+    {file = "jupyter_client-8.6.1-py3-none-any.whl", hash = "sha256:3b7bd22f058434e3b9a7ea4b1500ed47de2713872288c0d511d19926f99b459f"},
+    {file = "jupyter_client-8.6.1.tar.gz", hash = "sha256:e842515e2bab8e19186d89fdfea7abd15e39dd581f94e399f00e2af5a1652d3f"},
 ]
 
 [package.dependencies]
@@ -1397,13 +1482,13 @@ test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pyt
 
 [[package]]
 name = "jupyter-core"
-version = "5.7.0"
+version = "5.7.2"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "jupyter_core-5.7.0-py3-none-any.whl", hash = "sha256:16eea462f7dad23ba9f86542bdf17f830804e2028eb48d609b6134d91681e983"},
-    {file = "jupyter_core-5.7.0.tar.gz", hash = "sha256:cb8d3ed92144d2463a3c5664fdd686a3f0c1442ea45df8babb1c1a9e6333fe03"},
+    {file = "jupyter_core-5.7.2-py3-none-any.whl", hash = "sha256:4f7315d2f6b4bcf2e3e7cb6e46772eba760ae459cd1f59d29eb57b0a01bd7409"},
+    {file = "jupyter_core-5.7.2.tar.gz", hash = "sha256:aa5f8d32bbf6b431ac830496da7392035d6f61b4f54872f15c4bd2a9c3f536d9"},
 ]
 
 [package.dependencies]
@@ -1413,30 +1498,32 @@ traitlets = ">=5.3"
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "traitlets"]
-test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
+test = ["ipykernel", "pre-commit", "pytest (<8)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "keyring"
-version = "24.3.0"
+version = "25.1.0"
 description = "Store and access your passwords safely."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "keyring-24.3.0-py3-none-any.whl", hash = "sha256:4446d35d636e6a10b8bce7caa66913dd9eca5fd222ca03a3d42c38608ac30836"},
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+    {file = "keyring-25.1.0-py3-none-any.whl", hash = "sha256:26fc12e6a329d61d24aa47b22a7c5c3f35753df7d8f2860973cf94f4e1fb3427"},
+    {file = "keyring-25.1.0.tar.gz", hash = "sha256:7230ea690525133f6ad536a9b5def74a4bd52642abe594761028fc044d7c7893"},
 ]
 
 [package.dependencies]
 importlib-metadata = {version = ">=4.11.4", markers = "python_version < \"3.12\""}
 "jaraco.classes" = "*"
+"jaraco.context" = "*"
+"jaraco.functools" = "*"
 jeepney = {version = ">=0.4.2", markers = "sys_platform == \"linux\""}
 pywin32-ctypes = {version = ">=0.2.0", markers = "sys_platform == \"win32\""}
 SecretStorage = {version = ">=3.2", markers = "sys_platform == \"linux\""}
 
 [package.extras]
 completion = ["shtab (>=1.1.0)"]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["pytest (>=6,!=8.1.1)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [[package]]
 name = "kiwisolver"
@@ -1599,27 +1686,28 @@ files = [
 
 [[package]]
 name = "libsass"
-version = "0.22.0"
+version = "0.23.0"
 description = "Sass for Python: A straightforward binding of libsass for Python."
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
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+    {file = "libsass-0.23.0-cp38-abi3-macosx_11_0_x86_64.whl", hash = "sha256:34cae047cbbfc4ffa832a61cbb110f3c95f5471c6170c842d3fed161e40814dc"},
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 ]
 
 [package.dependencies]
@@ -1655,108 +1743,108 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
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@@ -1765,7 +1853,7 @@ cycler = ">=0.10"
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-numpy = ">=1.21,<2"
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 packaging = ">=20.0"
 pillow = ">=8"
 pyparsing = ">=2.3.1"
@@ -1880,13 +1968,13 @@ mkdocs = ">=1.0.3"
 
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+python-versions = ">=3.8"
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 pytkdocs = ">=0.14"
 
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-sphinx = ">=5"
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 tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
 
@@ -2325,13 +2465,13 @@ tests = ["pytest", "pytest-cov", "pytest-pep8"]
 
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 [[package]]
@@ -2495,42 +2635,42 @@ xarray = ["xarray"]
 
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 [package.dependencies]
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 ]
 
 [package.dependencies]
-numpy = ">=1.21.6,<1.28.0"
+numpy = ">=1.22.4,<2.3"
 
 [package.extras]
-dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
-doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
-test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
+doc = ["jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.12.0)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0)", "sphinx-design (>=0.4.0)"]
+test = ["array-api-strict", "asv", "gmpy2", "hypothesis (>=6.30)", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "secretstorage"
@@ -3487,56 +3691,50 @@ test = ["cython (>=3.0)", "filelock", "html5lib", "pytest (>=4.6)", "setuptools
 
 [[package]]
 name = "sphinxcontrib-applehelp"
-version = "1.0.7"
+version = "1.0.8"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
 optional = false
 python-versions = ">=3.9"
 files = [
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+    {file = "sphinxcontrib_applehelp-1.0.8.tar.gz", hash = "sha256:c40a4f96f3776c4393d933412053962fac2b84f4c99a7982ba42e09576a70619"},
 ]
 
-[package.dependencies]
-Sphinx = ">=5"
-
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
-version = "1.0.5"
+version = "1.0.6"
 description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
 optional = false
 python-versions = ">=3.9"
 files = [
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 ]
 
-[package.dependencies]
-Sphinx = ">=5"
-
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
-version = "2.0.4"
+version = "2.0.5"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
 optional = false
 python-versions = ">=3.9"
 files = [
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 ]
 
-[package.dependencies]
-Sphinx = ">=5"
-
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["html5lib", "pytest"]
 
 [[package]]
@@ -3555,38 +3753,34 @@ test = ["flake8", "mypy", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
-version = "1.0.6"
+version = "1.0.7"
 description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
 optional = false
 python-versions = ">=3.9"
 files = [
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 ]
 
-[package.dependencies]
-Sphinx = ">=5"
-
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
-version = "1.1.9"
+version = "1.1.10"
 description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
 optional = false
 python-versions = ">=3.9"
 files = [
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 ]
 
-[package.dependencies]
-Sphinx = ">=5"
-
 [package.extras]
 lint = ["docutils-stubs", "flake8", "mypy"]
+standalone = ["Sphinx (>=5)"]
 test = ["pytest"]
 
 [[package]]
@@ -3659,13 +3853,13 @@ files = [
 
 [[package]]
 name = "tomlkit"
-version = "0.12.3"
+version = "0.12.4"
 description = "Style preserving TOML library"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [[package]]
@@ -3690,13 +3884,13 @@ files = [
 
 [[package]]
 name = "tqdm"
-version = "4.66.1"
+version = "4.66.2"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -3710,18 +3904,18 @@ telegram = ["requests"]
 
 [[package]]
 name = "traitlets"
-version = "5.14.1"
+version = "5.14.2"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
-test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.1)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
 name = "twine"
@@ -3747,28 +3941,29 @@ urllib3 = ">=1.26.0"
 
 [[package]]
 name = "typing-extensions"
-version = "4.9.0"
+version = "4.11.0"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
 name = "urllib3"
-version = "2.1.0"
+version = "2.2.1"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
 brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+h2 = ["h2 (>=4,<5)"]
 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
 zstd = ["zstandard (>=0.18.0)"]
 
@@ -3791,38 +3986,40 @@ there = "*"
 
 [[package]]
 name = "watchdog"
-version = "3.0.0"
+version = "4.0.0"
 description = "Filesystem events monitoring"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+    {file = "watchdog-4.0.0-py3-none-win_amd64.whl", hash = "sha256:f970663fa4f7e80401a7b0cbeec00fa801bf0287d93d48368fc3e6fa32716245"},
+    {file = "watchdog-4.0.0-py3-none-win_ia64.whl", hash = "sha256:9a03e16e55465177d416699331b0f3564138f1807ecc5f2de9d55d8f188d08c7"},
+    {file = "watchdog-4.0.0.tar.gz", hash = "sha256:e3e7065cbdabe6183ab82199d7a4f6b3ba0a438c5a512a68559846ccb76a78ec"},
 ]
 
 [package.extras]
@@ -3830,13 +4027,13 @@ watchmedo = ["PyYAML (>=3.10)"]
 
 [[package]]
 name = "weasyprint"
-version = "60.2"
+version = "61.2"
 description = "The Awesome Document Factory"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "weasyprint-60.2-py3-none-any.whl", hash = "sha256:3e98eedcc1c5a14cb310c293c6d59a479f59a13f0d705ff07106482827fa5705"},
-    {file = "weasyprint-60.2.tar.gz", hash = "sha256:0c0cdd617a78699262b80026e67fa1692e3802cfa966395436eeaf6f787dd126"},
+    {file = "weasyprint-61.2-py3-none-any.whl", hash = "sha256:76c6dc0e75e09182d5645d92c66ddf86b1b992c9420235b723fb374b584e5bf4"},
+    {file = "weasyprint-61.2.tar.gz", hash = "sha256:47df6cfeeff8c6c28cf2e4caf837cde17715efe462708ada74baa2eb391b6059"},
 ]
 
 [package.dependencies]
@@ -4064,18 +4261,18 @@ multidict = ">=4.0"
 
 [[package]]
 name = "zipp"
-version = "3.17.0"
+version = "3.18.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
-    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
+    {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
+    {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [[package]]
 name = "zopfli"
@@ -4153,4 +4350,4 @@ test = ["pytest"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9, <3.13"
-content-hash = "dfa1e432b6ef295888c4dabff396d9fced15f45b0975cd97981ec5cf73905b9e"
+content-hash = "f75bd0b3b788c0718e9bd95f0dd5fc862779d3160ebc2a082308c5a1610fa71a"
diff --git a/pyproject.toml b/pyproject.toml
index d76f8a6..15be5fc 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -24,7 +24,7 @@ packages = [
 python = ">=3.9, <3.13"
 scipy = ">=1.10.0"
 safe-autonomy-dynamics = "^1.2.0"
-jax = { version = "0.4.3", extras = ["cpu"] }
+jax = { version = "0.4.26", extras = ["cpu"] }
 numpy = "^1.23.5"
 matplotlib = "^3.8.0"
 quadprog = "^0.1.11"

From b4c077d04417a65d29af6cb7efdc0df0956410c3 Mon Sep 17 00:00:00 2001
From: Charles Keating <Charles.Keating@udri.udayton.edu>
Date: Fri, 5 Apr 2024 14:16:26 -0400
Subject: [PATCH 2/2] fix(dependencies): updated safe-autonomy-dynamics to
 1.2.3 with jax extra

Also removed pre-commit default python version as a range of python
versions supported
---
 .pre-commit-config.yaml | 2 --
 poetry.lock             | 3 ++-
 pyproject.toml          | 2 +-
 3 files changed, 3 insertions(+), 4 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index ab747b1..4ed4b56 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,7 +1,5 @@
 # https://github.com/apache/airflow/blob/master/.pre-commit-config.yaml
 exclude: .*\.md
-default_language_version:
-  python: python3.8
 repos:
   - repo: local
     hooks:
diff --git a/poetry.lock b/poetry.lock
index 5885ec6..2dd7314 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -3545,6 +3545,7 @@ files = [
 ]
 
 [package.dependencies]
+jax = {version = "0.4.26", extras = ["cpu"], optional = true, markers = "extra == \"jax\""}
 numpy = ">=1.23.5,<2.0.0"
 pint = ">=0.22,<0.23"
 pydantic = ">=2.6.2,<3.0.0"
@@ -4350,4 +4351,4 @@ test = ["pytest"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9, <3.13"
-content-hash = "f75bd0b3b788c0718e9bd95f0dd5fc862779d3160ebc2a082308c5a1610fa71a"
+content-hash = "2edf4cc3132cc9f6c1319bb650a341c6230faff58c33fbe6b923c28d275e900f"
diff --git a/pyproject.toml b/pyproject.toml
index 15be5fc..f920dde 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,7 +23,7 @@ packages = [
 [tool.poetry.dependencies]
 python = ">=3.9, <3.13"
 scipy = ">=1.10.0"
-safe-autonomy-dynamics = "^1.2.0"
+safe-autonomy-dynamics = { version="^1.2.0", extras = ["jax"] }
 jax = { version = "0.4.26", extras = ["cpu"] }
 numpy = "^1.23.5"
 matplotlib = "^3.8.0"