From 5b6d76b8f63d4faf1c5cf453ceb7ebc1750d4a23 Mon Sep 17 00:00:00 2001
From: Adam Getchell <acgetchell@ucdavis.edu>
Date: Fri, 15 Dec 2023 11:17:24 -0800
Subject: [PATCH] Add Codecov and Clippy

---
 .github/workflows/codecov.yml     | 36 +++++++++++++++++++
 .github/workflows/rust-clippy.yml | 57 +++++++++++++++++++++++++++++++
 2 files changed, 93 insertions(+)
 create mode 100644 .github/workflows/codecov.yml
 create mode 100644 .github/workflows/rust-clippy.yml

diff --git a/.github/workflows/codecov.yml b/.github/workflows/codecov.yml
new file mode 100644
index 0000000..e5867f4
--- /dev/null
+++ b/.github/workflows/codecov.yml
@@ -0,0 +1,36 @@
+on: [push]
+
+name: Codecov
+
+jobs:
+  check:
+    name: Codecov via tarpaulin
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+
+      - uses: Swatinem/rust-cache@v2
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          override: true
+
+      - name: Run cargo-tarpaulin
+        uses: actions-rs/tarpaulin@v0.1
+        with:
+          version: '0.15.0'
+          args: '-- --test-threads 1'
+
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v3
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+      - name: Archive code coverage results
+        uses: actions/upload-artifact@v3
+        with:
+          name: code-coverage-report
+          path: cobertura.xml
\ No newline at end of file
diff --git a/.github/workflows/rust-clippy.yml b/.github/workflows/rust-clippy.yml
new file mode 100644
index 0000000..a02407f
--- /dev/null
+++ b/.github/workflows/rust-clippy.yml
@@ -0,0 +1,57 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+# rust-clippy is a tool that runs a bunch of lints to catch common
+# mistakes in your Rust code and help improve your Rust code.
+# More details at https://github.com/rust-lang/rust-clippy
+# and https://rust-lang.github.io/rust-clippy/
+
+name: rust-clippy analyze
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ "main" ]
+  schedule:
+    - cron: '17 22 * * 0'
+
+jobs:
+  rust-clippy-analyze:
+    name: Run rust-clippy analyzing
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      security-events: write
+      actions: read # only required for a private repository by github/codeql-action/upload-sarif to get the Action run status
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v3
+
+      - uses: Swatinem/rust-cache@v2
+
+      - name: Install Rust toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          profile: minimal
+          toolchain: stable
+          components: clippy
+          override: true
+
+      - name: Install required cargo
+        run: cargo install clippy-sarif sarif-fmt
+
+      - name: Run rust-clippy
+        run:
+          cargo clippy
+          --all-features
+          --message-format=json | clippy-sarif | tee rust-clippy-results.sarif | sarif-fmt
+        continue-on-error: true
+
+      - name: Upload analysis results to GitHub
+        uses: github/codeql-action/upload-sarif@v2
+        with:
+          sarif_file: rust-clippy-results.sarif
+          wait-for-processing: true
\ No newline at end of file