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1 parent 4c66bbd commit 8927631Copy full SHA for 8927631
scratches/ENA_gut/diamond_run.sh
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+#!/bin/bash
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+
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+diamond makedb --in /Nancy/data/input/RNA/ENA_gut/db/mgy_clusters.fa -d mgy --threads 16
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+for mode in 'rna' 'meta' 'rnaviral'
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+ do
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+ diamond blastp -d mgy -q ${mode}_rep_seq.fasta -o ${mode}.matches.m8 --query-cover 50 --id 50 --threads 16
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+ done
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