datapreprocessing.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\u001b[34mTask03_Liver\u001b[m\u001b[m/\r\n"
     ]
    }
   ],
   "source": [
    "ls datadownload/"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "datadownloadpath = './datadownload/Task03_Liver/'\n",
    "datasavepath = './datapreprocessed/Task03_Liver/'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "import glob\n",
    "import SimpleITK as sitk\n",
    "import numpy as np\n",
    "from scipy.ndimage import label, binary_fill_holes\n",
    "import os"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [],
   "source": [
    "os.mkdir(datasavepath)\n",
    "os.mkdir(datasavepath + 'Image')\n",
    "os.mkdir(datasavepath + 'Label')\n",
    "os.mkdir(datasavepath + 'Labeltumor')\n",
    "os.mkdir(datasavepath + 'processed')\n",
    "os.mkdir(datasavepath + 'mask')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "# helper functions copy pasted\n",
    "def resample_by_res(mov_img_obj, new_spacing, interpolator = sitk.sitkLinear, logging = True):\n",
    "    resample = sitk.ResampleImageFilter()\n",
    "    resample.SetInterpolator(interpolator)\n",
    "    resample.SetOutputDirection(mov_img_obj.GetDirection())\n",
    "    resample.SetOutputOrigin(mov_img_obj.GetOrigin())\n",
    "    resample.SetUseNearestNeighborExtrapolator(True)\n",
    "    mov_spacing = mov_img_obj.GetSpacing()\n",
    "\n",
    "    resample.SetOutputSpacing(new_spacing)\n",
    "    RES_COE = np.array(mov_spacing) * 1.0 / np.array(new_spacing)\n",
    "    new_size = np.array(mov_img_obj.GetSize()) *  RES_COE \n",
    "\n",
    "    resample.SetSize( [int(sz+1) for sz in new_size] )\n",
    "    if logging:\n",
    "        print(\"Spacing: {} -> {}\".format(mov_spacing, new_spacing))\n",
    "        print(\"Size {} -> {}\".format( mov_img_obj.GetSize(), new_size ))\n",
    "\n",
    "    return resample.Execute(mov_img_obj)\n",
    "\n",
    "def resample_lb_by_res(mov_lb_obj, new_spacing, interpolator = sitk.sitkLinear, ref_img = None, logging = True):\n",
    "    src_mat = sitk.GetArrayFromImage(mov_lb_obj)\n",
    "    lbvs = np.unique(src_mat)\n",
    "    if logging:\n",
    "        print(\"Label values: {}\".format(lbvs))\n",
    "    for idx, lbv in enumerate(lbvs):\n",
    "        _src_curr_mat = np.float32(src_mat == lbv) \n",
    "        _src_curr_obj = sitk.GetImageFromArray(_src_curr_mat)\n",
    "        _src_curr_obj.CopyInformation(mov_lb_obj)\n",
    "        _tar_curr_obj = resample_by_res( _src_curr_obj, new_spacing, interpolator, logging )\n",
    "        _tar_curr_mat = np.rint(sitk.GetArrayFromImage(_tar_curr_obj)) * lbv\n",
    "        if idx == 0:\n",
    "            out_vol = _tar_curr_mat\n",
    "        else:\n",
    "            out_vol[_tar_curr_mat == lbv] = lbv\n",
    "    out_obj = sitk.GetImageFromArray(out_vol)\n",
    "    out_obj.SetSpacing( _tar_curr_obj.GetSpacing() )\n",
    "    if ref_img != None:\n",
    "        out_obj.CopyInformation(ref_img)\n",
    "    return out_obj\n",
    "\n",
    "def remove_all_but_the_largest_connected_component(image: np.ndarray, for_which_classes: list, volume_per_voxel: float,\n",
    "                                                   minimum_valid_object_size: dict = None):\n",
    "    \"\"\"\n",
    "    removes all but the largest connected component, individually for each class\n",
    "    :param image:\n",
    "    :param for_which_classes: can be None. Should be list of int. Can also be something like [(1, 2), 2, 4].\n",
    "    Here (1, 2) will be treated as a joint region, not individual classes (example LiTS here we can use (1, 2)\n",
    "    to use all foreground classes together)\n",
    "    :param minimum_valid_object_size: Only objects larger than minimum_valid_object_size will be removed. Keys in\n",
    "    minimum_valid_object_size must match entries in for_which_classes\n",
    "    :return:\n",
    "    \"\"\"\n",
    "    if for_which_classes is None:\n",
    "        for_which_classes = np.unique(image)\n",
    "        for_which_classes = for_which_classes[for_which_classes > 0]\n",
    "\n",
    "    assert 0 not in for_which_classes, \"cannot remove background\"\n",
    "    largest_removed = {}\n",
    "    kept_size = {}\n",
    "    for c in for_which_classes:\n",
    "        if isinstance(c, (list, tuple)):\n",
    "            c = tuple(c)  # otherwise it cant be used as key in the dict\n",
    "            mask = np.zeros_like(image, dtype=bool)\n",
    "            for cl in c:\n",
    "                mask[image == cl] = True\n",
    "        else:\n",
    "            mask = image == c\n",
    "        # get labelmap and number of objects\n",
    "        lmap, num_objects = label(mask.astype(int))\n",
    "\n",
    "        # collect object sizes\n",
    "        object_sizes = {}\n",
    "        for object_id in range(1, num_objects + 1):\n",
    "            object_sizes[object_id] = (lmap == object_id).sum() * volume_per_voxel\n",
    "\n",
    "        largest_removed[c] = None\n",
    "        kept_size[c] = None\n",
    "\n",
    "        if num_objects > 0:\n",
    "            # we always keep the largest object. We could also consider removing the largest object if it is smaller\n",
    "            # than minimum_valid_object_size in the future but we don't do that now.\n",
    "            maximum_size = max(object_sizes.values())\n",
    "            kept_size[c] = maximum_size\n",
    "\n",
    "            for object_id in range(1, num_objects + 1):\n",
    "                # we only remove objects that are not the largest\n",
    "                if object_sizes[object_id] != maximum_size:\n",
    "                    # we only remove objects that are smaller than minimum_valid_object_size\n",
    "                    remove = True\n",
    "                    if minimum_valid_object_size is not None:\n",
    "                        remove = object_sizes[object_id] < minimum_valid_object_size[c]\n",
    "                    if remove:\n",
    "                        image[(lmap == object_id) & mask] = 0\n",
    "                        if largest_removed[c] is None:\n",
    "                            largest_removed[c] = object_sizes[object_id]\n",
    "                        else:\n",
    "                            largest_removed[c] = max(largest_removed[c], object_sizes[object_id])\n",
    "    return image, largest_removed, kept_size"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [],
   "source": [
    "IMG_FOLDER = datadownloadpath + 'imagesTr/'\n",
    "SEG_FOLDER = datadownloadpath + 'labelsTr/'\n",
    "imgs = glob.glob(IMG_FOLDER + \"/liver_*.nii.gz\")\n",
    "imgs = [ fid for fid in sorted(imgs) ]\n",
    "segs = [ fid for fid in sorted(glob.glob(SEG_FOLDER + \"/liver_*.nii.gz\")) ]\n",
    "\n",
    "pids = [pid.split(\"_\")[-1].split(\".\")[0] for pid in imgs]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['./datadownload/Task03_Liver/imagesTr/liver_0.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_1.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_10.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_100.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_101.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_102.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_103.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_104.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_105.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_106.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_107.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_108.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_109.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_11.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_110.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_111.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_112.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_113.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_114.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_115.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_116.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_117.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_118.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_119.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_12.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_120.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_121.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_122.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_123.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_124.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_125.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_126.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_127.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_128.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_129.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_13.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_130.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_14.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_15.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_16.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_17.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_18.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_19.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_2.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_20.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_21.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_22.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_23.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_24.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_25.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_26.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_27.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_28.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_29.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_3.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_30.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_31.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_32.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_33.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_34.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_35.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_36.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_37.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_38.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_39.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_4.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_40.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_41.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_42.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_43.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_44.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_45.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_46.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_47.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_48.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_49.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_5.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_50.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_51.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_52.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_53.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_54.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_55.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_56.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_57.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_58.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_59.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_6.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_60.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_61.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_62.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_63.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_64.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_65.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_66.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_67.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_68.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_69.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_7.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_70.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_71.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_72.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_73.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_74.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_75.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_76.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_77.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_78.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_79.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_8.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_80.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_81.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_82.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_83.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_84.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_85.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_86.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_87.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_88.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_89.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_9.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_90.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_91.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_92.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_93.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_94.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_95.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_96.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_97.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_98.nii.gz',\n",
       " './datadownload/Task03_Liver/imagesTr/liver_99.nii.gz']"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "imgs"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['./datadownload/Task03_Liver/labelsTr/liver_0.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_1.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_10.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_100.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_101.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_102.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_103.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_104.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_105.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_106.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_107.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_108.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_109.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_11.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_110.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_111.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_112.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_113.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_114.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_115.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_116.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_117.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_118.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_119.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_12.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_120.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_121.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_122.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_123.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_124.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_125.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_126.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_127.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_128.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_129.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_13.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_130.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_14.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_15.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_16.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_17.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_18.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_19.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_2.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_20.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_21.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_22.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_23.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_24.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_25.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_26.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_27.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_28.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_29.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_3.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_30.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_31.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_32.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_33.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_34.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_35.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_36.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_37.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_38.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_39.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_4.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_40.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_41.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_42.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_43.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_44.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_45.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_46.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_47.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_48.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_49.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_5.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_50.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_51.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_52.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_53.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_54.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_55.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_56.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_57.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_58.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_59.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_6.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_60.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_61.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_62.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_63.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_64.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_65.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_66.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_67.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_68.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_69.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_7.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_70.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_71.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_72.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_73.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_74.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_75.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_76.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_77.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_78.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_79.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_8.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_80.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_81.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_82.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_83.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_84.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_85.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_86.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_87.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_88.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_89.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_9.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_90.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_91.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_92.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_93.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_94.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_95.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_96.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_97.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_98.nii.gz',\n",
       " './datadownload/Task03_Liver/labelsTr/liver_99.nii.gz']"
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "segs"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['0',\n",
       " '1',\n",
       " '10',\n",
       " '100',\n",
       " '101',\n",
       " '102',\n",
       " '103',\n",
       " '104',\n",
       " '105',\n",
       " '106',\n",
       " '107',\n",
       " '108',\n",
       " '109',\n",
       " '11',\n",
       " '110',\n",
       " '111',\n",
       " '112',\n",
       " '113',\n",
       " '114',\n",
       " '115',\n",
       " '116',\n",
       " '117',\n",
       " '118',\n",
       " '119',\n",
       " '12',\n",
       " '120',\n",
       " '121',\n",
       " '122',\n",
       " '123',\n",
       " '124',\n",
       " '125',\n",
       " '126',\n",
       " '127',\n",
       " '128',\n",
       " '129',\n",
       " '13',\n",
       " '130',\n",
       " '14',\n",
       " '15',\n",
       " '16',\n",
       " '17',\n",
       " '18',\n",
       " '19',\n",
       " '2',\n",
       " '20',\n",
       " '21',\n",
       " '22',\n",
       " '23',\n",
       " '24',\n",
       " '25',\n",
       " '26',\n",
       " '27',\n",
       " '28',\n",
       " '29',\n",
       " '3',\n",
       " '30',\n",
       " '31',\n",
       " '32',\n",
       " '33',\n",
       " '34',\n",
       " '35',\n",
       " '36',\n",
       " '37',\n",
       " '38',\n",
       " '39',\n",
       " '4',\n",
       " '40',\n",
       " '41',\n",
       " '42',\n",
       " '43',\n",
       " '44',\n",
       " '45',\n",
       " '46',\n",
       " '47',\n",
       " '48',\n",
       " '49',\n",
       " '5',\n",
       " '50',\n",
       " '51',\n",
       " '52',\n",
       " '53',\n",
       " '54',\n",
       " '55',\n",
       " '56',\n",
       " '57',\n",
       " '58',\n",
       " '59',\n",
       " '6',\n",
       " '60',\n",
       " '61',\n",
       " '62',\n",
       " '63',\n",
       " '64',\n",
       " '65',\n",
       " '66',\n",
       " '67',\n",
       " '68',\n",
       " '69',\n",
       " '7',\n",
       " '70',\n",
       " '71',\n",
       " '72',\n",
       " '73',\n",
       " '74',\n",
       " '75',\n",
       " '76',\n",
       " '77',\n",
       " '78',\n",
       " '79',\n",
       " '8',\n",
       " '80',\n",
       " '81',\n",
       " '82',\n",
       " '83',\n",
       " '84',\n",
       " '85',\n",
       " '86',\n",
       " '87',\n",
       " '88',\n",
       " '89',\n",
       " '9',\n",
       " '90',\n",
       " '91',\n",
       " '92',\n",
       " '93',\n",
       " '94',\n",
       " '95',\n",
       " '96',\n",
       " '97',\n",
       " '98',\n",
       " '99']"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "pids"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step 1, Data resample"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [],
   "source": [
    "targetspacing = [1.9, 1.9, 2.47]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Spacing: (0.703125, 0.703125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 75) -> [189.47368421 189.47368421 151.82186235]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.703125, 0.703125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 75) -> [189.47368421 189.47368421 151.82186235]\n",
      "Spacing: (0.703125, 0.703125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 75) -> [189.47368421 189.47368421 151.82186235]\n",
      "Spacing: (0.703125, 0.703125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 75) -> [189.47368421 189.47368421 151.82186235]\n",
      "Spacing: (0.6757810115814209, 0.6757810115814209, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 123) -> [182.10519891 182.10519891 248.98785425]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6757810115814209, 0.6757810115814209, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 123) -> [182.10519891 182.10519891 248.98785425]\n",
      "Spacing: (0.6757810115814209, 0.6757810115814209, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 123) -> [182.10519891 182.10519891 248.98785425]\n",
      "Spacing: (0.6757810115814209, 0.6757810115814209, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 123) -> [182.10519891 182.10519891 248.98785425]\n",
      "Spacing: (0.76953125, 0.76953125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 501) -> [207.36842105 207.36842105 202.8340081 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.76953125, 0.76953125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 501) -> [207.36842105 207.36842105 202.8340081 ]\n",
      "Spacing: (0.76953125, 0.76953125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 501) -> [207.36842105 207.36842105 202.8340081 ]\n",
      "Spacing: (0.76953125, 0.76953125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 501) -> [207.36842105 207.36842105 202.8340081 ]\n",
      "Spacing: (0.69921875, 0.69921875, 0.6999999284744263) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 685) -> [188.42105263 188.42105263 194.12953482]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6992188096046448, 0.6992188096046448, 0.6999999284744263) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 685) -> [188.42106869 188.42106869 194.12953482]\n",
      "Spacing: (0.6992188096046448, 0.6992188096046448, 0.6999999284744263) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 685) -> [188.42106869 188.42106869 194.12953482]\n",
      "Spacing: (0.6992188096046448, 0.6992188096046448, 0.6999999284744263) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 685) -> [188.42106869 188.42106869 194.12953482]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [190.         190.         193.56274974]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [190.         190.         193.56274974]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [190.         190.         193.56274974]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [190.         190.         193.56274974]\n",
      "Spacing: (0.716796875, 0.716796875, 0.6999852061271667) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 677) -> [193.15789474 193.15789474 191.85829334]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.716796875, 0.716796875, 0.6999852061271667) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 677) -> [193.15789474 193.15789474 191.85829334]\n",
      "Spacing: (0.716796875, 0.716796875, 0.6999852061271667) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 677) -> [193.15789474 193.15789474 191.85829334]\n",
      "Spacing: (0.716796875, 0.716796875, 0.6999852061271667) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 677) -> [193.15789474 193.15789474 191.85829334]\n",
      "Spacing: (0.85546875, 0.85546875, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [230.52631579 230.52631579 193.56274974]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.8554688096046448, 0.8554688096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [230.52633185 230.52633185 193.56274974]\n",
      "Spacing: (0.8554688096046448, 0.8554688096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [230.52633185 230.52633185 193.56274974]\n",
      "Spacing: (0.8554688096046448, 0.8554688096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 683) -> [230.52633185 230.52633185 193.56274974]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 781) -> [210.45895225 210.45895225 252.95546936]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 781) -> [210.45895225 210.45895225 252.95546936]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 781) -> [210.45895225 210.45895225 252.95546936]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 781) -> [210.45895225 210.45895225 252.95546936]\n",
      "Spacing: (0.84375, 0.84375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 986) -> [227.36842105 227.36842105 279.43319362]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.84375, 0.84375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 986) -> [227.36842105 227.36842105 279.43319362]\n",
      "Spacing: (0.84375, 0.84375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 986) -> [227.36842105 227.36842105 279.43319362]\n",
      "Spacing: (0.7289999723434448, 0.7289999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 771) -> [196.44630834 196.44630834 249.71660291]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.7289999723434448, 0.7289999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 771) -> [196.44630834 196.44630834 249.71660291]\n",
      "Spacing: (0.7289999723434448, 0.7289999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 771) -> [196.44630834 196.44630834 249.71660291]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 771) -> [210.72842247 210.72842247 249.71660291]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 771) -> [210.72842247 210.72842247 249.71660291]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 771) -> [210.72842247 210.72842247 249.71660291]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 771) -> [210.72842247 210.72842247 249.71660291]\n",
      "Spacing: (0.7289999723434448, 0.7289999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 856) -> [196.44630834 196.44630834 277.24696769]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7289999723434448, 0.7289999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 856) -> [196.44630834 196.44630834 277.24696769]\n",
      "Spacing: (0.7289999723434448, 0.7289999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 856) -> [196.44630834 196.44630834 277.24696769]\n",
      "Spacing: (0.7289999723434448, 0.7289999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 856) -> [196.44630834 196.44630834 277.24696769]\n",
      "Spacing: (0.7630000114440918, 0.7630000114440918, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 756) -> [205.60842414 205.60842414 244.85830324]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7630000114440918, 0.7630000114440918, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 756) -> [205.60842414 205.60842414 244.85830324]\n",
      "Spacing: (0.7630000114440918, 0.7630000114440918, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 756) -> [205.60842414 205.60842414 244.85830324]\n",
      "Spacing: (0.7630000114440918, 0.7630000114440918, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 756) -> [205.60842414 205.60842414 244.85830324]\n",
      "Spacing: (0.671875, 0.671875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 466) -> [181.05263158 181.05263158 188.66396761]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.671875, 0.671875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 466) -> [181.05263158 181.05263158 188.66396761]\n",
      "Spacing: (0.671875, 0.671875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 466) -> [181.05263158 181.05263158 188.66396761]\n",
      "Spacing: (0.671875, 0.671875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 466) -> [181.05263158 181.05263158 188.66396761]\n",
      "Spacing: (0.7200000286102295, 0.7200000286102295, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 816) -> [194.02106034 194.02106034 264.29150191]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7200000286102295, 0.7200000286102295, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 816) -> [194.02106034 194.02106034 264.29150191]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Spacing: (0.7200000286102295, 0.7200000286102295, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 816) -> [194.02106034 194.02106034 264.29150191]\n",
      "Spacing: (0.7200000286102295, 0.7200000286102295, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 816) -> [194.02106034 194.02106034 264.29150191]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 761) -> [210.72842247 210.72842247 246.47773647]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 761) -> [210.72842247 210.72842247 246.47773647]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 761) -> [210.72842247 210.72842247 246.47773647]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 761) -> [210.72842247 210.72842247 246.47773647]\n",
      "Spacing: (0.6399999856948853, 0.6399999856948853, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [172.46315404 172.46315404 243.23887002]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6399999856948853, 0.6399999856948853, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [172.46315404 172.46315404 243.23887002]\n",
      "Spacing: (0.6399999856948853, 0.6399999856948853, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [172.46315404 172.46315404 243.23887002]\n",
      "Spacing: (0.6399999856948853, 0.6399999856948853, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [172.46315404 172.46315404 243.23887002]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [210.45895225 210.45895225 270.7692348 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [210.45895225 210.45895225 270.7692348 ]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [210.45895225 210.45895225 270.7692348 ]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [210.45895225 210.45895225 270.7692348 ]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 846) -> [210.72842247 210.72842247 274.00810125]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 846) -> [210.72842247 210.72842247 274.00810125]\n",
      "Spacing: (0.7820000052452087, 0.7820000052452087, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 846) -> [210.72842247 210.72842247 274.00810125]\n",
      "Spacing: (0.7559999823570251, 0.7559999823570251, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 846) -> [203.72210051 203.72210051 274.00810125]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.7559999823570251, 0.7559999823570251, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 846) -> [203.72210051 203.72210051 274.00810125]\n",
      "Spacing: (0.7559999823570251, 0.7559999823570251, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 846) -> [203.72210051 203.72210051 274.00810125]\n",
      "Spacing: (0.7890625, 0.7890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 908) -> [212.63157895 212.63157895 257.32793084]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7890625, 0.7890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 908) -> [212.63157895 212.63157895 257.32793084]\n",
      "Spacing: (0.7890625, 0.7890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 908) -> [212.63157895 212.63157895 257.32793084]\n",
      "Spacing: (0.7890625, 0.7890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 908) -> [212.63157895 212.63157895 257.32793084]\n",
      "Spacing: (0.6800000071525574, 0.6800000071525574, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [183.24210719 183.24210719 270.7692348 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6800000071525574, 0.6800000071525574, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [183.24210719 183.24210719 270.7692348 ]\n",
      "Spacing: (0.6800000071525574, 0.6800000071525574, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [183.24210719 183.24210719 270.7692348 ]\n",
      "Spacing: (0.6800000071525574, 0.6800000071525574, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [183.24210719 183.24210719 270.7692348 ]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 427) -> [200.52631579 200.52631579 259.31174089]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 427) -> [200.52631579 200.52631579 259.31174089]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 427) -> [200.52631579 200.52631579 259.31174089]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 427) -> [200.52631579 200.52631579 259.31174089]\n",
      "Spacing: (0.84375, 0.84375, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 461) -> [227.36842105 227.36842105 279.95951417]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.84375, 0.84375, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 461) -> [227.36842105 227.36842105 279.95951417]\n",
      "Spacing: (0.84375, 0.84375, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 461) -> [227.36842105 227.36842105 279.95951417]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 455) -> [176.31578947 176.31578947 184.21052632]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 455) -> [176.31578947 176.31578947 184.21052632]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 455) -> [176.31578947 176.31578947 184.21052632]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 455) -> [176.31578947 176.31578947 184.21052632]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 424) -> [200.52631579 200.52631579 257.48987854]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 424) -> [200.52631579 200.52631579 257.48987854]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 424) -> [200.52631579 200.52631579 257.48987854]\n",
      "Spacing: (0.744140625, 0.744140625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 424) -> [200.52631579 200.52631579 257.48987854]\n",
      "Spacing: (0.794921875, 0.794921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 463) -> [214.21052632 214.21052632 281.17408907]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.794921875, 0.794921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 463) -> [214.21052632 214.21052632 281.17408907]\n",
      "Spacing: (0.794921875, 0.794921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 463) -> [214.21052632 214.21052632 281.17408907]\n",
      "Spacing: (0.794921875, 0.794921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 463) -> [214.21052632 214.21052632 281.17408907]\n",
      "Spacing: (0.689453125, 0.689453125, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 422) -> [185.78947368 185.78947368 256.27530364]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.689453125, 0.689453125, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 422) -> [185.78947368 185.78947368 256.27530364]\n",
      "Spacing: (0.689453125, 0.689453125, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 422) -> [185.78947368 185.78947368 256.27530364]\n",
      "Spacing: (0.689453125, 0.689453125, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 422) -> [185.78947368 185.78947368 256.27530364]\n",
      "Spacing: (0.748046875, 0.748046875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 432) -> [201.57894737 201.57894737 262.34817814]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.748046875, 0.748046875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 432) -> [201.57894737 201.57894737 262.34817814]\n",
      "Spacing: (0.748046875, 0.748046875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 432) -> [201.57894737 201.57894737 262.34817814]\n",
      "Spacing: (0.748046875, 0.748046875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 432) -> [201.57894737 201.57894737 262.34817814]\n",
      "Spacing: (0.69921875, 0.69921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 407) -> [188.42105263 188.42105263 247.1659919 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6992188096046448, 0.6992188096046448, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 407) -> [188.42106869 188.42106869 247.1659919 ]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Spacing: (0.6992188096046448, 0.6992188096046448, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 407) -> [188.42106869 188.42106869 247.1659919 ]\n",
      "Spacing: (0.6992188096046448, 0.6992188096046448, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 407) -> [188.42106869 188.42106869 247.1659919 ]\n",
      "Spacing: (0.712890625, 0.712890625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 410) -> [192.10526316 192.10526316 248.98785425]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.712890625, 0.712890625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 410) -> [192.10526316 192.10526316 248.98785425]\n",
      "Spacing: (0.712890625, 0.712890625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 410) -> [192.10526316 192.10526316 248.98785425]\n",
      "Spacing: (0.712890625, 0.712890625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 410) -> [192.10526316 192.10526316 248.98785425]\n",
      "Spacing: (0.6640625, 0.6640625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 401) -> [178.94736842 178.94736842 243.52226721]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6640625, 0.6640625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 401) -> [178.94736842 178.94736842 243.52226721]\n",
      "Spacing: (0.6640625, 0.6640625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 401) -> [178.94736842 178.94736842 243.52226721]\n",
      "Spacing: (0.6640625, 0.6640625, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 401) -> [178.94736842 178.94736842 243.52226721]\n",
      "Spacing: (0.771484375, 0.771484375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 987) -> [207.89473684 207.89473684 279.71659443]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.771484375, 0.771484375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 987) -> [207.89473684 207.89473684 279.71659443]\n",
      "Spacing: (0.771484375, 0.771484375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 987) -> [207.89473684 207.89473684 279.71659443]\n",
      "Spacing: (0.771484375, 0.771484375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 987) -> [207.89473684 207.89473684 279.71659443]\n",
      "Spacing: (0.78125, 0.78125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 654) -> [210.52631579 210.52631579 185.3441264 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.78125, 0.78125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 654) -> [210.52631579 210.52631579 185.3441264 ]\n",
      "Spacing: (0.78125, 0.78125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 654) -> [210.52631579 210.52631579 185.3441264 ]\n",
      "Spacing: (0.78125, 0.78125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 654) -> [210.52631579 210.52631579 185.3441264 ]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 338) -> [190.         190.          95.78947205]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 338) -> [190.         190.          95.78947205]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 338) -> [190.         190.          95.78947205]\n",
      "Spacing: (0.705078125, 0.705078125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 338) -> [190.         190.          95.78947205]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 605) -> [228.42105263 228.42105263 244.93927126]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 605) -> [228.42105263 228.42105263 244.93927126]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 605) -> [228.42105263 228.42105263 244.93927126]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 605) -> [228.42105263 228.42105263 244.93927126]\n",
      "Spacing: (0.68359375, 0.68359375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 624) -> [184.21052632 184.21052632 176.84210225]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6835938096046448, 0.6835938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 624) -> [184.21054238 184.21054238 176.84210225]\n",
      "Spacing: (0.6835938096046448, 0.6835938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 624) -> [184.21054238 184.21054238 176.84210225]\n",
      "Spacing: (0.6835938096046448, 0.6835938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 624) -> [184.21054238 184.21054238 176.84210225]\n",
      "Spacing: (0.685546875, 0.685546875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 588) -> [184.73684211 184.73684211 238.05668016]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.685546875, 0.685546875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 588) -> [184.73684211 184.73684211 238.05668016]\n",
      "Spacing: (0.685546875, 0.685546875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 588) -> [184.73684211 184.73684211 238.05668016]\n",
      "Spacing: (0.685546875, 0.685546875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 588) -> [184.73684211 184.73684211 238.05668016]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 565) -> [176.31578947 176.31578947 228.74493927]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 565) -> [176.31578947 176.31578947 228.74493927]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 565) -> [176.31578947 176.31578947 228.74493927]\n",
      "Spacing: (0.654296875, 0.654296875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 565) -> [176.31578947 176.31578947 228.74493927]\n",
      "Spacing: (0.703125, 0.703125, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 689) -> [189.47368421 189.47368421 223.15789806]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.703125, 0.703125, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 689) -> [189.47368421 189.47368421 223.15789806]\n",
      "Spacing: (0.703125, 0.703125, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 689) -> [189.47368421 189.47368421 223.15789806]\n",
      "Spacing: (0.703125, 0.703125, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 689) -> [189.47368421 189.47368421 223.15789806]\n",
      "Spacing: (0.7441409826278687, 0.7441409826278687, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 826) -> [200.52641216 200.52641216 267.53036836]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7441409826278687, 0.7441409826278687, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 826) -> [200.52641216 200.52641216 267.53036836]\n",
      "Spacing: (0.7441409826278687, 0.7441409826278687, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 826) -> [200.52641216 200.52641216 267.53036836]\n",
      "Spacing: (0.7441409826278687, 0.7441409826278687, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 826) -> [200.52641216 200.52641216 267.53036836]\n",
      "Spacing: (0.921875, 0.921875, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 845) -> [248.42105263 248.42105263 273.6842146 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.921875, 0.921875, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 845) -> [248.42105263 248.42105263 273.6842146 ]\n",
      "Spacing: (0.921875, 0.921875, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 845) -> [248.42105263 248.42105263 273.6842146 ]\n",
      "Spacing: (0.921875, 0.921875, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 845) -> [248.42105263 248.42105263 273.6842146 ]\n",
      "Spacing: (0.751953125, 0.751953125, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 547) -> [202.63157895 202.63157895 177.16332816]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.751953125, 0.751953125, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 547) -> [202.63157895 202.63157895 177.16332816]\n",
      "Spacing: (0.751953125, 0.751953125, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 547) -> [202.63157895 202.63157895 177.16332816]\n",
      "Spacing: (0.751953125, 0.751953125, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 547) -> [202.63157895 202.63157895 177.16332816]\n",
      "Spacing: (0.775390625, 0.775390625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 517) -> [208.94736842 208.94736842 209.31174089]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.775390625, 0.775390625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 517) -> [208.94736842 208.94736842 209.31174089]\n",
      "Spacing: (0.775390625, 0.775390625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 517) -> [208.94736842 208.94736842 209.31174089]\n",
      "Spacing: (0.775390625, 0.775390625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 517) -> [208.94736842 208.94736842 209.31174089]\n",
      "Spacing: (0.802734375, 0.802734375, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 574) -> [216.31578947 216.31578947 185.90813595]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Label values: [0 1 2]\n",
      "Spacing: (0.802734375, 0.802734375, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 574) -> [216.31578947 216.31578947 185.90813595]\n",
      "Spacing: (0.802734375, 0.802734375, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 574) -> [216.31578947 216.31578947 185.90813595]\n",
      "Spacing: (0.802734375, 0.802734375, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 574) -> [216.31578947 216.31578947 185.90813595]\n",
      "Spacing: (0.767578125, 0.767578125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 437) -> [206.84210526 206.84210526 176.92307692]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.767578125, 0.767578125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 437) -> [206.84210526 206.84210526 176.92307692]\n",
      "Spacing: (0.767578125, 0.767578125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 437) -> [206.84210526 206.84210526 176.92307692]\n",
      "Spacing: (0.767578125, 0.767578125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 437) -> [206.84210526 206.84210526 176.92307692]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 3.2699999809265137) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 247) -> [263.15776624 263.15776624 326.99999809]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 3.2699999809265137) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 247) -> [263.15776624 263.15776624 326.99999809]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 3.2699999809265137) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 247) -> [263.15776624 263.15776624 326.99999809]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 3.2699999809265137) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 247) -> [263.15776624 263.15776624 326.99999809]\n",
      "Spacing: (0.66015625, 0.66015625, 1.2000000476837158) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 391) -> [177.89473684 177.89473684 189.95952172]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.66015625, 0.66015625, 1.2000000476837158) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 391) -> [177.89473684 177.89473684 189.95952172]\n",
      "Spacing: (0.66015625, 0.66015625, 1.2000000476837158) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 391) -> [177.89473684 177.89473684 189.95952172]\n",
      "Spacing: (0.66015625, 0.66015625, 1.2000000476837158) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 391) -> [177.89473684 177.89473684 189.95952172]\n",
      "Spacing: (0.669921875, 0.669921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 276) -> [180.52631579 180.52631579 167.61133603]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.669921875, 0.669921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 276) -> [180.52631579 180.52631579 167.61133603]\n",
      "Spacing: (0.669921875, 0.669921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 276) -> [180.52631579 180.52631579 167.61133603]\n",
      "Spacing: (0.669921875, 0.669921875, 1.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 276) -> [180.52631579 180.52631579 167.61133603]\n",
      "Spacing: (0.767578125, 0.767578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 601) -> [206.84210526 206.84210526 170.32388374]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.767578125, 0.767578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 601) -> [206.84210526 206.84210526 170.32388374]\n",
      "Spacing: (0.767578125, 0.767578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 601) -> [206.84210526 206.84210526 170.32388374]\n",
      "Spacing: (0.767578125, 0.767578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 601) -> [206.84210526 206.84210526 170.32388374]\n",
      "Spacing: (0.86328125, 0.86328125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 668) -> [232.63157895 232.63157895 189.31173767]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.86328125, 0.86328125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 668) -> [232.63157895 232.63157895 189.31173767]\n",
      "Spacing: (0.86328125, 0.86328125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 668) -> [232.63157895 232.63157895 189.31173767]\n",
      "Spacing: (0.86328125, 0.86328125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 668) -> [232.63157895 232.63157895 189.31173767]\n",
      "Spacing: (0.73828125, 0.73828125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 861) -> [198.94736842 198.94736842 244.00809301]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.73828125, 0.73828125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 861) -> [198.94736842 198.94736842 244.00809301]\n",
      "Spacing: (0.73828125, 0.73828125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 861) -> [198.94736842 198.94736842 244.00809301]\n",
      "Spacing: (0.73828125, 0.73828125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 861) -> [198.94736842 198.94736842 244.00809301]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 129) -> [269.47368421 269.47368421  52.22672065]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 129) -> [269.47368421 269.47368421  52.22672065]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 129) -> [269.47368421 269.47368421  52.22672065]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 129) -> [269.47368421 269.47368421  52.22672065]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 172) -> [269.47368421 269.47368421  69.63562753]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 172) -> [269.47368421 269.47368421  69.63562753]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 172) -> [269.47368421 269.47368421  69.63562753]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 172) -> [269.47368421 269.47368421  69.63562753]\n",
      "Spacing: (0.693359375, 0.693359375, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 534) -> [186.84210526 186.84210526 216.19433198]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.693359375, 0.693359375, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 534) -> [186.84210526 186.84210526 216.19433198]\n",
      "Spacing: (0.693359375, 0.693359375, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 534) -> [186.84210526 186.84210526 216.19433198]\n",
      "Spacing: (0.693359375, 0.693359375, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 534) -> [186.84210526 186.84210526 216.19433198]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 200) -> [269.47368421 269.47368421  80.97165992]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 200) -> [269.47368421 269.47368421  80.97165992]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 200) -> [269.47368421 269.47368421  80.97165992]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 200) -> [269.47368421 269.47368421  80.97165992]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 91) -> [269.47368421 269.47368421  36.84210526]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 91) -> [269.47368421 269.47368421  36.84210526]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 91) -> [269.47368421 269.47368421  36.84210526]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 91) -> [269.47368421 269.47368421  36.84210526]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 139) -> [269.47368421 269.47368421  56.27530364]\n",
      "Label values: [0 1]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 139) -> [269.47368421 269.47368421  56.27530364]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 139) -> [269.47368421 269.47368421  56.27530364]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 135) -> [269.47368421 269.47368421  54.65587045]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 135) -> [269.47368421 269.47368421  54.65587045]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 135) -> [269.47368421 269.47368421  54.65587045]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 135) -> [269.47368421 269.47368421  54.65587045]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 151) -> [269.47368421 269.47368421  61.13360324]\n",
      "Label values: [0 1]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 151) -> [269.47368421 269.47368421  61.13360324]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 151) -> [269.47368421 269.47368421  61.13360324]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 111) -> [269.47368421 269.47368421  44.93927126]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 111) -> [269.47368421 269.47368421  44.93927126]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 111) -> [269.47368421 269.47368421  44.93927126]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 111) -> [269.47368421 269.47368421  44.93927126]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 132) -> [269.47368421 269.47368421  53.44129555]\n",
      "Label values: [0 1]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 132) -> [269.47368421 269.47368421  53.44129555]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 132) -> [269.47368421 269.47368421  53.44129555]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 260) -> [269.47368421 269.47368421 105.26315789]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 260) -> [269.47368421 269.47368421 105.26315789]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 260) -> [269.47368421 269.47368421 105.26315789]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 260) -> [269.47368421 269.47368421 105.26315789]\n",
      "Spacing: (0.9023439884185791, 0.9023439884185791, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [243.15795898 243.15795898 272.38866803]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.9023439884185791, 0.9023439884185791, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [243.15795898 243.15795898 272.38866803]\n",
      "Spacing: (0.9023439884185791, 0.9023439884185791, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [243.15795898 243.15795898 272.38866803]\n",
      "Spacing: (0.9023439884185791, 0.9023439884185791, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [243.15795898 243.15795898 272.38866803]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 122) -> [269.47368421 269.47368421  49.39271255]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 113) -> [269.47368421 269.47368421  45.74898785]\n",
      "Label values: [0 1]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 113) -> [269.47368421 269.47368421  45.74898785]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 113) -> [269.47368421 269.47368421  45.74898785]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 125) -> [269.47368421 269.47368421  50.60728745]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 125) -> [269.47368421 269.47368421  50.60728745]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 125) -> [269.47368421 269.47368421  50.60728745]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 125) -> [269.47368421 269.47368421  50.60728745]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 155) -> [269.47368421 269.47368421  62.75303644]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 155) -> [269.47368421 269.47368421  62.75303644]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 155) -> [269.47368421 269.47368421  62.75303644]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 155) -> [269.47368421 269.47368421  62.75303644]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 119) -> [269.47368421 269.47368421  48.17813765]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 119) -> [269.47368421 269.47368421  48.17813765]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 119) -> [269.47368421 269.47368421  48.17813765]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 119) -> [269.47368421 269.47368421  48.17813765]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 74) -> [269.47368421 269.47368421  29.95951417]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 74) -> [269.47368421 269.47368421  29.95951417]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 74) -> [269.47368421 269.47368421  29.95951417]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 74) -> [269.47368421 269.47368421  29.95951417]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 124) -> [269.47368421 269.47368421  50.20242915]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 225) -> [269.47368421 269.47368421  91.09311741]\n",
      "Label values: [0 1]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 225) -> [269.47368421 269.47368421  91.09311741]\n",
      "Spacing: (1.0, 1.0, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 225) -> [269.47368421 269.47368421  91.09311741]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [263.15776624 263.15776624 246.96356275]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [263.15776624 263.15776624 246.96356275]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [263.15776624 263.15776624 246.96356275]\n",
      "Spacing: (0.9765620231628418, 0.9765620231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [263.15776624 263.15776624 246.96356275]\n",
      "Spacing: (0.955078125, 0.955078125, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 254) -> [257.36842105 257.36842105 257.08502024]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.955078125, 0.955078125, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 254) -> [257.36842105 257.36842105 257.08502024]\n",
      "Spacing: (0.955078125, 0.955078125, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 254) -> [257.36842105 257.36842105 257.08502024]\n",
      "Spacing: (0.955078125, 0.955078125, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 254) -> [257.36842105 257.36842105 257.08502024]\n",
      "Spacing: (0.96875, 0.96875, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 537) -> [261.05263158 261.05263158 173.92451046]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.96875, 0.96875, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 537) -> [261.05263158 261.05263158 173.92451046]\n",
      "Spacing: (0.96875, 0.96875, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 537) -> [261.05263158 261.05263158 173.92451046]\n",
      "Spacing: (0.96875, 0.96875, 0.7999879717826843) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 537) -> [261.05263158 261.05263158 173.92451046]\n",
      "Spacing: (0.90625, 0.90625, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 240) -> [244.21052632 244.21052632 242.91497976]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.90625, 0.90625, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 240) -> [244.21052632 244.21052632 242.91497976]\n",
      "Spacing: (0.90625, 0.90625, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 240) -> [244.21052632 244.21052632 242.91497976]\n",
      "Spacing: (0.90625, 0.90625, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 240) -> [244.21052632 244.21052632 242.91497976]\n",
      "Spacing: (0.90234375, 0.90234375, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 227) -> [243.15789474 243.15789474 275.70850202]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.90234375, 0.90234375, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 227) -> [243.15789474 243.15789474 275.70850202]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Spacing: (0.90234375, 0.90234375, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 227) -> [243.15789474 243.15789474 275.70850202]\n",
      "Spacing: (0.90234375, 0.90234375, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 227) -> [243.15789474 243.15789474 275.70850202]\n",
      "Spacing: (0.8359379768371582, 0.8359379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 237) -> [225.26328639 225.26328639 239.87854251]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.8359379768371582, 0.8359379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 237) -> [225.26328639 225.26328639 239.87854251]\n",
      "Spacing: (0.8359379768371582, 0.8359379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 237) -> [225.26328639 225.26328639 239.87854251]\n",
      "Spacing: (0.8359379768371582, 0.8359379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 237) -> [225.26328639 225.26328639 239.87854251]\n",
      "Spacing: (0.8500000238418579, 0.8500000238418579, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 105) -> [229.052638   229.052638   170.04048583]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.8500000238418579, 0.8500000238418579, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 105) -> [229.052638   229.052638   170.04048583]\n",
      "Spacing: (0.8500000238418579, 0.8500000238418579, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 105) -> [229.052638   229.052638   170.04048583]\n",
      "Spacing: (0.8500000238418579, 0.8500000238418579, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 105) -> [229.052638   229.052638   170.04048583]\n",
      "Spacing: (0.828125, 0.828125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 96) -> [223.15789474 223.15789474 194.33198381]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.828125, 0.828125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 96) -> [223.15789474 223.15789474 194.33198381]\n",
      "Spacing: (0.828125, 0.828125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 96) -> [223.15789474 223.15789474 194.33198381]\n",
      "Spacing: (0.828125, 0.828125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 96) -> [223.15789474 223.15789474 194.33198381]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 192) -> [179.47378058 179.47378058 194.33198381]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 192) -> [179.47378058 179.47378058 194.33198381]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 192) -> [179.47378058 179.47378058 194.33198381]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 192) -> [179.47378058 179.47378058 194.33198381]\n",
      "Spacing: (0.8027340173721313, 0.8027340173721313, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 239) -> [216.3156931  216.3156931  193.52226721]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.8027340173721313, 0.8027340173721313, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 239) -> [216.3156931  216.3156931  193.52226721]\n",
      "Spacing: (0.8027340173721313, 0.8027340173721313, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 239) -> [216.3156931  216.3156931  193.52226721]\n",
      "Spacing: (0.8027340173721313, 0.8027340173721313, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 239) -> [216.3156931  216.3156931  193.52226721]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 366) -> [189.47368421 189.47368421 185.22267206]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 366) -> [189.47368421 189.47368421 185.22267206]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 366) -> [189.47368421 189.47368421 185.22267206]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 366) -> [189.47368421 189.47368421 185.22267206]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 212) -> [184.21059056 184.21059056 171.65991903]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 212) -> [184.21059056 184.21059056 171.65991903]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 212) -> [184.21059056 184.21059056 171.65991903]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 212) -> [184.21059056 184.21059056 171.65991903]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 216) -> [184.21059056 184.21059056 174.89878543]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 216) -> [184.21059056 184.21059056 174.89878543]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 216) -> [184.21059056 184.21059056 174.89878543]\n",
      "Spacing: (0.6835939884185791, 0.6835939884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 216) -> [184.21059056 184.21059056 174.89878543]\n",
      "Spacing: (0.873046875, 0.873046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 518) -> [235.26315789 235.26315789 209.71659919]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.873046875, 0.873046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 518) -> [235.26315789 235.26315789 209.71659919]\n",
      "Spacing: (0.873046875, 0.873046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 518) -> [235.26315789 235.26315789 209.71659919]\n",
      "Spacing: (0.873046875, 0.873046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 518) -> [235.26315789 235.26315789 209.71659919]\n",
      "Spacing: (0.7988280057907104, 0.7988280057907104, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [215.26312577 215.26312577 197.5708502 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7988280057907104, 0.7988280057907104, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [215.26312577 215.26312577 197.5708502 ]\n",
      "Spacing: (0.7988280057907104, 0.7988280057907104, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [215.26312577 215.26312577 197.5708502 ]\n",
      "Spacing: (0.7988280057907104, 0.7988280057907104, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 244) -> [215.26312577 215.26312577 197.5708502 ]\n",
      "Spacing: (0.7578120231628418, 0.7578120231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 193) -> [204.21039782 204.21039782 195.34412955]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7578120231628418, 0.7578120231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 193) -> [204.21039782 204.21039782 195.34412955]\n",
      "Spacing: (0.7578120231628418, 0.7578120231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 193) -> [204.21039782 204.21039782 195.34412955]\n",
      "Spacing: (0.7578120231628418, 0.7578120231628418, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 193) -> [204.21039782 204.21039782 195.34412955]\n",
      "Spacing: (0.6445310115814209, 0.6445310115814209, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 188) -> [173.68414628 173.68414628 152.22672065]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6445310115814209, 0.6445310115814209, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 188) -> [173.68414628 173.68414628 152.22672065]\n",
      "Spacing: (0.6445310115814209, 0.6445310115814209, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 188) -> [173.68414628 173.68414628 152.22672065]\n",
      "Spacing: (0.6445310115814209, 0.6445310115814209, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 188) -> [173.68414628 173.68414628 152.22672065]\n",
      "Spacing: (0.7402340173721313, 0.7402340173721313, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 104) -> [199.47358784 199.47358784 210.52631579]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7402340173721313, 0.7402340173721313, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 104) -> [199.47358784 199.47358784 210.52631579]\n",
      "Spacing: (0.7402340173721313, 0.7402340173721313, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 104) -> [199.47358784 199.47358784 210.52631579]\n",
      "Spacing: (0.7402340173721313, 0.7402340173721313, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 104) -> [199.47358784 199.47358784 210.52631579]\n",
      "Spacing: (0.7773439884185791, 0.7773439884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 230) -> [209.47374846 209.47374846 186.23481781]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7773439884185791, 0.7773439884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 230) -> [209.47374846 209.47374846 186.23481781]\n",
      "Spacing: (0.7773439884185791, 0.7773439884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 230) -> [209.47374846 209.47374846 186.23481781]\n",
      "Spacing: (0.7773439884185791, 0.7773439884185791, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 230) -> [209.47374846 209.47374846 186.23481781]\n",
      "Spacing: (0.625, 0.625, 0.7989500164985657) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 513) -> [168.42105263 168.42105263 165.93577266]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Label values: [0 1 2]\n",
      "Spacing: (0.625, 0.625, 0.7989500164985657) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 513) -> [168.42105263 168.42105263 165.93577266]\n",
      "Spacing: (0.625, 0.625, 0.7989500164985657) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 513) -> [168.42105263 168.42105263 165.93577266]\n",
      "Spacing: (0.625, 0.625, 0.7989500164985657) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 513) -> [168.42105263 168.42105263 165.93577266]\n",
      "Spacing: (0.7128909826278687, 0.7128909826278687, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 86) -> [192.10535953 192.10535953 174.08906883]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7128909826278687, 0.7128909826278687, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 86) -> [192.10535953 192.10535953 174.08906883]\n",
      "Spacing: (0.7128909826278687, 0.7128909826278687, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 86) -> [192.10535953 192.10535953 174.08906883]\n",
      "Spacing: (0.7128909826278687, 0.7128909826278687, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 86) -> [192.10535953 192.10535953 174.08906883]\n",
      "Spacing: (0.7109379768371582, 0.7109379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 165) -> [191.57907586 191.57907586 167.00404858]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7109379768371582, 0.7109379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 165) -> [191.57907586 191.57907586 167.00404858]\n",
      "Spacing: (0.7109379768371582, 0.7109379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 165) -> [191.57907586 191.57907586 167.00404858]\n",
      "Spacing: (0.7109379768371582, 0.7109379768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 165) -> [191.57907586 191.57907586 167.00404858]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.49993896484375) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 266) -> [179.47378058 179.47378058 269.22419621]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.49993896484375) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 266) -> [179.47378058 179.47378058 269.22419621]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.49993896484375) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 266) -> [179.47378058 179.47378058 269.22419621]\n",
      "Spacing: (0.6660159826278687, 0.6660159826278687, 2.49993896484375) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 266) -> [179.47378058 179.47378058 269.22419621]\n",
      "Spacing: (0.75390625, 0.75390625, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 245) -> [203.15789474 203.15789474 198.3805668 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.75390625, 0.75390625, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 245) -> [203.15789474 203.15789474 198.3805668 ]\n",
      "Spacing: (0.75390625, 0.75390625, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 245) -> [203.15789474 203.15789474 198.3805668 ]\n",
      "Spacing: (0.75390625, 0.75390625, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 245) -> [203.15789474 203.15789474 198.3805668 ]\n",
      "Spacing: (0.748046875, 0.748046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [201.57894737 201.57894737 219.02834008]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.748046875, 0.748046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [201.57894737 201.57894737 219.02834008]\n",
      "Spacing: (0.748046875, 0.748046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [201.57894737 201.57894737 219.02834008]\n",
      "Spacing: (0.748046875, 0.748046875, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [201.57894737 201.57894737 219.02834008]\n",
      "Spacing: (0.5976560115814209, 0.5976560115814209, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 333) -> [161.05256733 161.05256733 168.52226721]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.5976560115814209, 0.5976560115814209, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 333) -> [161.05256733 161.05256733 168.52226721]\n",
      "Spacing: (0.5976560115814209, 0.5976560115814209, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 333) -> [161.05256733 161.05256733 168.52226721]\n",
      "Spacing: (0.5976560115814209, 0.5976560115814209, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 333) -> [161.05256733 161.05256733 168.52226721]\n",
      "Spacing: (0.556640625, 0.556640625, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [150.         150.         190.28340081]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.556640625, 0.556640625, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [150.         150.         190.28340081]\n",
      "Spacing: (0.556640625, 0.556640625, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [150.         150.         190.28340081]\n",
      "Spacing: (0.556640625, 0.556640625, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [150.         150.         190.28340081]\n",
      "Spacing: (0.6777340173721313, 0.6777340173721313, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 93) -> [182.63148258 182.63148258  94.12955466]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6777340173721313, 0.6777340173721313, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 93) -> [182.63148258 182.63148258  94.12955466]\n",
      "Spacing: (0.6777340173721313, 0.6777340173721313, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 93) -> [182.63148258 182.63148258  94.12955466]\n",
      "Spacing: (0.6777340173721313, 0.6777340173721313, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 93) -> [182.63148258 182.63148258  94.12955466]\n",
      "Spacing: (0.951171875, 0.951171875, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 121) -> [256.31578947 256.31578947 195.951417  ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.951171875, 0.951171875, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 121) -> [256.31578947 256.31578947 195.951417  ]\n",
      "Spacing: (0.951171875, 0.951171875, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 121) -> [256.31578947 256.31578947 195.951417  ]\n",
      "Spacing: (0.951171875, 0.951171875, 4.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 121) -> [256.31578947 256.31578947 195.951417  ]\n",
      "Spacing: (0.8261719942092896, 0.8261719942092896, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 107) -> [222.63161107 222.63161107 216.59919028]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.8261719942092896, 0.8261719942092896, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 107) -> [222.63161107 222.63161107 216.59919028]\n",
      "Spacing: (0.8261719942092896, 0.8261719942092896, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 107) -> [222.63161107 222.63161107 216.59919028]\n",
      "Spacing: (0.8261719942092896, 0.8261719942092896, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 107) -> [222.63161107 222.63161107 216.59919028]\n",
      "Spacing: (0.7578125, 0.7578125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 89) -> [204.21052632 204.21052632 180.16194332]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7578125, 0.7578125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 89) -> [204.21052632 204.21052632 180.16194332]\n",
      "Spacing: (0.7578125, 0.7578125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 89) -> [204.21052632 204.21052632 180.16194332]\n",
      "Spacing: (0.7578125, 0.7578125, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 89) -> [204.21052632 204.21052632 180.16194332]\n",
      "Spacing: (0.7421879768371582, 0.7421879768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 168) -> [200.0001285  200.0001285  170.04048583]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7421879768371582, 0.7421879768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 168) -> [200.0001285  200.0001285  170.04048583]\n",
      "Spacing: (0.7421879768371582, 0.7421879768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 168) -> [200.0001285  200.0001285  170.04048583]\n",
      "Spacing: (0.7421879768371582, 0.7421879768371582, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 168) -> [200.0001285  200.0001285  170.04048583]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [210.45895225 210.45895225 190.28340081]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [210.45895225 210.45895225 190.28340081]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [210.45895225 210.45895225 190.28340081]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 5.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 94) -> [210.45895225 210.45895225 190.28340081]\n",
      "Spacing: (0.7851560115814209, 0.7851560115814209, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 198) -> [211.57888312 211.57888312 200.4048583 ]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7851560115814209, 0.7851560115814209, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 198) -> [211.57888312 211.57888312 200.4048583 ]\n",
      "Spacing: (0.7851560115814209, 0.7851560115814209, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 198) -> [211.57888312 211.57888312 200.4048583 ]\n",
      "Spacing: (0.7851560115814209, 0.7851560115814209, 2.5) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 198) -> [211.57888312 211.57888312 200.4048583 ]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Spacing: (0.796875, 0.796875, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 147) -> [214.73684211 214.73684211 178.54251012]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.796875, 0.796875, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 147) -> [214.73684211 214.73684211 178.54251012]\n",
      "Spacing: (0.796875, 0.796875, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 147) -> [214.73684211 214.73684211 178.54251012]\n",
      "Spacing: (0.796875, 0.796875, 3.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 147) -> [214.73684211 214.73684211 178.54251012]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [228.42105263 228.42105263 219.02834008]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [228.42105263 228.42105263 219.02834008]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [228.42105263 228.42105263 219.02834008]\n",
      "Spacing: (0.84765625, 0.84765625, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 541) -> [228.42105263 228.42105263 219.02834008]\n",
      "Spacing: (0.68359375, 0.68359375, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 217) -> [184.21052632 184.21052632 175.70850202]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.68359375, 0.68359375, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 217) -> [184.21052632 184.21052632 175.70850202]\n",
      "Spacing: (0.68359375, 0.68359375, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 217) -> [184.21052632 184.21052632 175.70850202]\n",
      "Spacing: (0.68359375, 0.68359375, 2.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 217) -> [184.21052632 184.21052632 175.70850202]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 343) -> [189.47368421 189.47368421 173.58299595]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 343) -> [189.47368421 189.47368421 173.58299595]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 343) -> [189.47368421 189.47368421 173.58299595]\n",
      "Spacing: (0.703125, 0.703125, 1.25) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 343) -> [189.47368421 189.47368421 173.58299595]\n",
      "Spacing: (0.625, 0.625, 0.8009999990463257) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 519) -> [168.42105263 168.42105263 168.30728725]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.625, 0.625, 0.8009999990463257) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 519) -> [168.42105263 168.42105263 168.30728725]\n",
      "Spacing: (0.625, 0.625, 0.8009999990463257) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 519) -> [168.42105263 168.42105263 168.30728725]\n",
      "Spacing: (0.625, 0.625, 0.8009999990463257) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 519) -> [168.42105263 168.42105263 168.30728725]\n",
      "Spacing: (0.7421875, 0.7421875, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 871) -> [200.         200.         246.84210106]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7421875, 0.7421875, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 871) -> [200.         200.         246.84210106]\n",
      "Spacing: (0.7421875, 0.7421875, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 871) -> [200.         200.         246.84210106]\n",
      "Spacing: (0.7421875, 0.7421875, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 871) -> [200.         200.         246.84210106]\n",
      "Spacing: (0.7578125, 0.7578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 733) -> [204.21052632 204.21052632 207.73278998]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7578125, 0.7578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 733) -> [204.21052632 204.21052632 207.73278998]\n",
      "Spacing: (0.7578125, 0.7578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 733) -> [204.21052632 204.21052632 207.73278998]\n",
      "Spacing: (0.7578125, 0.7578125, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 733) -> [204.21052632 204.21052632 207.73278998]\n",
      "Spacing: (0.64453125, 0.64453125, 0.7000000476837158) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 630) -> [173.68421053 173.68421053 178.54252228]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6445313096046448, 0.6445313096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 630) -> [173.68422659 173.68422659 178.54250708]\n",
      "Spacing: (0.6445313096046448, 0.6445313096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 630) -> [173.68422659 173.68422659 178.54250708]\n",
      "Spacing: (0.6445313096046448, 0.6445313096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 630) -> [173.68422659 173.68422659 178.54250708]\n",
      "Spacing: (0.68359375, 0.68359375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 647) -> [184.21052632 184.21052632 183.36032076]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6835938096046448, 0.6835938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 647) -> [184.21054238 184.21054238 183.36032076]\n",
      "Spacing: (0.6835938096046448, 0.6835938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 647) -> [184.21054238 184.21054238 183.36032076]\n",
      "Spacing: (0.6835938096046448, 0.6835938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 647) -> [184.21054238 184.21054238 183.36032076]\n",
      "Spacing: (0.8539999723434448, 0.8539999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 896) -> [230.13051886 230.13051886 290.20243347]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.8539999723434448, 0.8539999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 896) -> [230.13051886 230.13051886 290.20243347]\n",
      "Spacing: (0.8539999723434448, 0.8539999723434448, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 896) -> [230.13051886 230.13051886 290.20243347]\n",
      "Spacing: (0.7559999823570251, 0.7559999823570251, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 811) -> [203.72210051 203.72210051 262.67206869]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7559999823570251, 0.7559999823570251, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 811) -> [203.72210051 203.72210051 262.67206869]\n",
      "Spacing: (0.7559999823570251, 0.7559999823570251, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 811) -> [203.72210051 203.72210051 262.67206869]\n",
      "Spacing: (0.7559999823570251, 0.7559999823570251, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 811) -> [203.72210051 203.72210051 262.67206869]\n",
      "Spacing: (0.6370000243186951, 0.6370000243186951, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 766) -> [171.6547434  171.6547434  248.09716969]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.6370000243186951, 0.6370000243186951, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 766) -> [171.6547434  171.6547434  248.09716969]\n",
      "Spacing: (0.6370000243186951, 0.6370000243186951, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 766) -> [171.6547434  171.6547434  248.09716969]\n",
      "Spacing: (0.8203125, 0.8203125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 549) -> [221.05263158 221.05263158 222.26720648]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.8203125, 0.8203125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 549) -> [221.05263158 221.05263158 222.26720648]\n",
      "Spacing: (0.8203125, 0.8203125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 549) -> [221.05263158 221.05263158 222.26720648]\n",
      "Spacing: (0.8203125, 0.8203125, 1.0) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 549) -> [221.05263158 221.05263158 222.26720648]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [210.45895225 210.45895225 243.23887002]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [210.45895225 210.45895225 243.23887002]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [210.45895225 210.45895225 243.23887002]\n",
      "Spacing: (0.781000018119812, 0.781000018119812, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [210.45895225 210.45895225 243.23887002]\n",
      "Spacing: (0.8579999804496765, 0.8579999804496765, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [231.20841578 231.20841578 243.23887002]\n",
      "Label values: [0 1]\n",
      "Spacing: (0.8579999804496765, 0.8579999804496765, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [231.20841578 231.20841578 243.23887002]\n",
      "Spacing: (0.8579999804496765, 0.8579999804496765, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 751) -> [231.20841578 231.20841578 243.23887002]\n",
      "Spacing: (0.6710000038146973, 0.6710000038146973, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [180.81684313 180.81684313 270.7692348 ]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Label values: [0 1 2]\n",
      "Spacing: (0.6710000038146973, 0.6710000038146973, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [180.81684313 180.81684313 270.7692348 ]\n",
      "Spacing: (0.6710000038146973, 0.6710000038146973, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [180.81684313 180.81684313 270.7692348 ]\n",
      "Spacing: (0.6710000038146973, 0.6710000038146973, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 836) -> [180.81684313 180.81684313 270.7692348 ]\n",
      "Spacing: (0.6620000004768372, 0.6620000004768372, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 696) -> [178.39157908 178.39157908 225.42510457]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.6620000004768372, 0.6620000004768372, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 696) -> [178.39157908 178.39157908 225.42510457]\n",
      "Spacing: (0.6620000004768372, 0.6620000004768372, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 696) -> [178.39157908 178.39157908 225.42510457]\n",
      "Spacing: (0.6620000004768372, 0.6620000004768372, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 696) -> [178.39157908 178.39157908 225.42510457]\n",
      "Spacing: (0.837890625, 0.837890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 917) -> [225.78947368 225.78947368 259.87853808]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.837890625, 0.837890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 917) -> [225.78947368 225.78947368 259.87853808]\n",
      "Spacing: (0.837890625, 0.837890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 917) -> [225.78947368 225.78947368 259.87853808]\n",
      "Spacing: (0.837890625, 0.837890625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 917) -> [225.78947368 225.78947368 259.87853808]\n",
      "Spacing: (0.7379999756813049, 0.7379999756813049, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [198.87157239 198.87157239 272.38866803]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7379999756813049, 0.7379999756813049, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [198.87157239 198.87157239 272.38866803]\n",
      "Spacing: (0.7379999756813049, 0.7379999756813049, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [198.87157239 198.87157239 272.38866803]\n",
      "Spacing: (0.7379999756813049, 0.7379999756813049, 0.800000011920929) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 841) -> [198.87157239 198.87157239 272.38866803]\n",
      "Spacing: (0.74609375, 0.74609375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 722) -> [201.05263158 201.05263158 204.61538113]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7460938096046448, 0.7460938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 722) -> [201.05264764 201.05264764 204.61538113]\n",
      "Spacing: (0.7460938096046448, 0.7460938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 722) -> [201.05264764 201.05264764 204.61538113]\n",
      "Spacing: (0.7460938096046448, 0.7460938096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 722) -> [201.05264764 201.05264764 204.61538113]\n",
      "Spacing: (0.72265625, 0.72265625, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 671) -> [194.73684211 194.73684211 190.16194008]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.7226563096046448, 0.7226563096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 671) -> [194.73685817 194.73685817 190.16194008]\n",
      "Spacing: (0.7226563096046448, 0.7226563096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 671) -> [194.73685817 194.73685817 190.16194008]\n",
      "Spacing: (0.7226563096046448, 0.7226563096046448, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 671) -> [194.73685817 194.73685817 190.16194008]\n",
      "Spacing: (0.734375, 0.734375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 645) -> [197.89473684 197.89473684 182.79351915]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.734375, 0.734375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 645) -> [197.89473684 197.89473684 182.79351915]\n",
      "Spacing: (0.734375, 0.734375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 645) -> [197.89473684 197.89473684 182.79351915]\n",
      "Spacing: (0.734375, 0.734375, 0.699999988079071) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 645) -> [197.89473684 197.89473684 182.79351915]\n",
      "Spacing: (0.78125, 0.78125, 0.699984073638916) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 629) -> [210.52631579 210.52631579 178.25505357]\n",
      "Label values: [0 1 2]\n",
      "Spacing: (0.78125, 0.78125, 0.699984073638916) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 629) -> [210.52631579 210.52631579 178.25505357]\n",
      "Spacing: (0.78125, 0.78125, 0.699984073638916) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 629) -> [210.52631579 210.52631579 178.25505357]\n",
      "Spacing: (0.78125, 0.78125, 0.699984073638916) -> [1.9, 1.9, 2.47]\n",
      "Size (512, 512, 629) -> [210.52631579 210.52631579 178.25505357]\n"
     ]
    }
   ],
   "source": [
    "for (imgfile, lblfile, pid) in zip(imgs, segs, pids):\n",
    "    savename = 'liver_' + pid + '.nii.gz'\n",
    "    img_obj = sitk.ReadImage( imgfile )\n",
    "    seg_obj = sitk.ReadImage( lblfile )\n",
    "    img_spa_ori = img_obj.GetSpacing()\n",
    "    res_img_o = resample_by_res(img_obj, targetspacing, interpolator = sitk.sitkLinear,\n",
    "                                    logging = True)\n",
    "    res_lb_o = resample_lb_by_res(seg_obj, targetspacing, interpolator = sitk.sitkLinear,\n",
    "                                  ref_img = res_img_o, logging = True)\n",
    "    sitk.WriteImage(res_img_o, datasavepath + 'Image/' + savename, True) \n",
    "    sitk.WriteImage(res_lb_o, datasavepath + 'Label/' + savename, True) "
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step 2, Intensity Normalization"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [],
   "source": [
    "IMG_FOLDER_SAVE = datasavepath + 'Image/'\n",
    "imgs = glob.glob(IMG_FOLDER_SAVE + \"/liver_*.nii.gz\")\n",
    "imgs = [ fid for fid in sorted(imgs) ]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {},
   "outputs": [],
   "source": [
    "pixel_mean = 98.0451\n",
    "pixel_std = 32.4977\n",
    "intensity_05percent = -8.6201\n",
    "intensity_995percent = 182.1394"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Id 0 normalized\n",
      "Id 1 normalized\n",
      "Id 10 normalized\n",
      "Id 100 normalized\n",
      "Id 101 normalized\n",
      "Id 102 normalized\n",
      "Id 103 normalized\n",
      "Id 104 normalized\n",
      "Id 105 normalized\n",
      "Id 106 normalized\n",
      "Id 107 normalized\n",
      "Id 108 normalized\n",
      "Id 109 normalized\n",
      "Id 11 normalized\n",
      "Id 110 normalized\n",
      "Id 111 normalized\n",
      "Id 112 normalized\n",
      "Id 113 normalized\n",
      "Id 114 normalized\n",
      "Id 115 normalized\n",
      "Id 116 normalized\n",
      "Id 117 normalized\n",
      "Id 118 normalized\n",
      "Id 119 normalized\n",
      "Id 12 normalized\n",
      "Id 120 normalized\n",
      "Id 121 normalized\n",
      "Id 122 normalized\n",
      "Id 123 normalized\n",
      "Id 124 normalized\n",
      "Id 125 normalized\n",
      "Id 126 normalized\n",
      "Id 127 normalized\n",
      "Id 128 normalized\n",
      "Id 129 normalized\n",
      "Id 13 normalized\n",
      "Id 130 normalized\n",
      "Id 14 normalized\n",
      "Id 15 normalized\n",
      "Id 16 normalized\n",
      "Id 17 normalized\n",
      "Id 18 normalized\n",
      "Id 19 normalized\n",
      "Id 2 normalized\n",
      "Id 20 normalized\n",
      "Id 21 normalized\n",
      "Id 22 normalized\n",
      "Id 23 normalized\n",
      "Id 24 normalized\n",
      "Id 25 normalized\n",
      "Id 26 normalized\n",
      "Id 27 normalized\n",
      "Id 28 normalized\n",
      "Id 29 normalized\n",
      "Id 3 normalized\n",
      "Id 30 normalized\n",
      "Id 31 normalized\n",
      "Id 32 normalized\n",
      "Id 33 normalized\n",
      "Id 34 normalized\n",
      "Id 35 normalized\n",
      "Id 36 normalized\n",
      "Id 37 normalized\n",
      "Id 38 normalized\n",
      "Id 39 normalized\n",
      "Id 4 normalized\n",
      "Id 40 normalized\n",
      "Id 41 normalized\n",
      "Id 42 normalized\n",
      "Id 43 normalized\n",
      "Id 44 normalized\n",
      "Id 45 normalized\n",
      "Id 46 normalized\n",
      "Id 47 normalized\n",
      "Id 48 normalized\n",
      "Id 49 normalized\n",
      "Id 5 normalized\n",
      "Id 50 normalized\n",
      "Id 51 normalized\n",
      "Id 52 normalized\n",
      "Id 53 normalized\n",
      "Id 54 normalized\n",
      "Id 55 normalized\n",
      "Id 56 normalized\n",
      "Id 57 normalized\n",
      "Id 58 normalized\n",
      "Id 59 normalized\n",
      "Id 6 normalized\n",
      "Id 60 normalized\n",
      "Id 61 normalized\n",
      "Id 62 normalized\n",
      "Id 63 normalized\n",
      "Id 64 normalized\n",
      "Id 65 normalized\n",
      "Id 66 normalized\n",
      "Id 67 normalized\n",
      "Id 68 normalized\n",
      "Id 69 normalized\n",
      "Id 7 normalized\n",
      "Id 70 normalized\n",
      "Id 71 normalized\n",
      "Id 72 normalized\n",
      "Id 73 normalized\n",
      "Id 74 normalized\n",
      "Id 75 normalized\n",
      "Id 76 normalized\n",
      "Id 77 normalized\n",
      "Id 78 normalized\n",
      "Id 79 normalized\n",
      "Id 8 normalized\n",
      "Id 80 normalized\n",
      "Id 81 normalized\n",
      "Id 82 normalized\n",
      "Id 83 normalized\n",
      "Id 84 normalized\n",
      "Id 85 normalized\n",
      "Id 86 normalized\n",
      "Id 87 normalized\n",
      "Id 88 normalized\n",
      "Id 89 normalized\n",
      "Id 9 normalized\n",
      "Id 90 normalized\n",
      "Id 91 normalized\n",
      "Id 92 normalized\n",
      "Id 93 normalized\n",
      "Id 94 normalized\n",
      "Id 95 normalized\n",
      "Id 96 normalized\n",
      "Id 97 normalized\n",
      "Id 98 normalized\n",
      "Id 99 normalized\n"
     ]
    }
   ],
   "source": [
    "for (imgfile, pid) in zip(imgs, pids):\n",
    "    savename = 'liver_' + pid + '.nii.gz'\n",
    "    img_obj = sitk.ReadImage( imgfile )\n",
    "    \n",
    "    array = sitk.GetArrayFromImage(img_obj)\n",
    "\n",
    "    array[array < intensity_05percent] = intensity_05percent\n",
    "    array[array > intensity_995percent] = intensity_995percent\n",
    "    array = (array - pixel_mean) / pixel_std\n",
    "\n",
    "    normalized_img = sitk.GetImageFromArray(array)\n",
    "    normalized_img.CopyInformation(img_obj)\n",
    "    \n",
    "    sitk.WriteImage(normalized_img, datasavepath + 'processed/' + savename, True) \n",
    "    print('Id ' + pid + ' normalized')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step 3, Generate Binary Segmentation Masks"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {},
   "outputs": [],
   "source": [
    "SEG_FOLDER_SAVE = datasavepath + 'Label/'\n",
    "segs = [ fid for fid in sorted(glob.glob(SEG_FOLDER_SAVE + \"/liver_*.nii.gz\")) ]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Id 0 generated\n",
      "Id 1 generated\n",
      "Id 10 generated\n",
      "Id 100 generated\n",
      "Id 101 generated\n",
      "Id 102 generated\n",
      "Id 103 generated\n",
      "Id 104 generated\n",
      "Id 105 generated\n",
      "Id 106 generated\n",
      "Id 107 generated\n",
      "Id 108 generated\n",
      "Id 109 generated\n",
      "Id 11 generated\n",
      "Id 110 generated\n",
      "Id 111 generated\n",
      "Id 112 generated\n",
      "Id 113 generated\n",
      "Id 114 generated\n",
      "Id 115 generated\n",
      "Id 116 generated\n",
      "Id 117 generated\n",
      "Id 118 generated\n",
      "Id 119 generated\n",
      "Id 12 generated\n",
      "Id 120 generated\n",
      "Id 121 generated\n",
      "Id 122 generated\n",
      "Id 123 generated\n",
      "Id 124 generated\n",
      "Id 125 generated\n",
      "Id 126 generated\n",
      "Id 127 generated\n",
      "Id 128 generated\n",
      "Id 129 generated\n",
      "Id 13 generated\n",
      "Id 130 generated\n",
      "Id 14 generated\n",
      "Id 15 generated\n",
      "Id 16 generated\n",
      "Id 17 generated\n",
      "Id 18 generated\n",
      "Id 19 generated\n",
      "Id 2 generated\n",
      "Id 20 generated\n",
      "Id 21 generated\n",
      "Id 22 generated\n",
      "Id 23 generated\n",
      "Id 24 generated\n",
      "Id 25 generated\n",
      "Id 26 generated\n",
      "Id 27 generated\n",
      "Id 28 generated\n",
      "Id 29 generated\n",
      "Id 3 generated\n",
      "Id 30 generated\n",
      "Id 31 generated\n",
      "Id 32 generated\n",
      "Id 33 generated\n",
      "Id 34 generated\n",
      "Id 35 generated\n",
      "Id 36 generated\n",
      "Id 37 generated\n",
      "Id 38 generated\n",
      "Id 39 generated\n",
      "Id 4 generated\n",
      "Id 40 generated\n",
      "Id 41 generated\n",
      "Id 42 generated\n",
      "Id 43 generated\n",
      "Id 44 generated\n",
      "Id 45 generated\n",
      "Id 46 generated\n",
      "Id 47 generated\n",
      "Id 48 generated\n",
      "Id 49 generated\n",
      "Id 5 generated\n",
      "Id 50 generated\n",
      "Id 51 generated\n",
      "Id 52 generated\n",
      "Id 53 generated\n",
      "Id 54 generated\n",
      "Id 55 generated\n",
      "Id 56 generated\n",
      "Id 57 generated\n",
      "Id 58 generated\n",
      "Id 59 generated\n",
      "Id 6 generated\n",
      "Id 60 generated\n",
      "Id 61 generated\n",
      "Id 62 generated\n",
      "Id 63 generated\n",
      "Id 64 generated\n",
      "Id 65 generated\n",
      "Id 66 generated\n",
      "Id 67 generated\n",
      "Id 68 generated\n",
      "Id 69 generated\n",
      "Id 7 generated\n",
      "Id 70 generated\n",
      "Id 71 generated\n",
      "Id 72 generated\n",
      "Id 73 generated\n",
      "Id 74 generated\n",
      "Id 75 generated\n",
      "Id 76 generated\n",
      "Id 77 generated\n",
      "Id 78 generated\n",
      "Id 79 generated\n",
      "Id 8 generated\n",
      "Id 80 generated\n",
      "Id 81 generated\n",
      "Id 82 generated\n",
      "Id 83 generated\n",
      "Id 84 generated\n",
      "Id 85 generated\n",
      "Id 86 generated\n",
      "Id 87 generated\n",
      "Id 88 generated\n",
      "Id 89 generated\n",
      "Id 9 generated\n",
      "Id 90 generated\n",
      "Id 91 generated\n",
      "Id 92 generated\n",
      "Id 93 generated\n",
      "Id 94 generated\n",
      "Id 95 generated\n",
      "Id 96 generated\n",
      "Id 97 generated\n",
      "Id 98 generated\n",
      "Id 99 generated\n"
     ]
    }
   ],
   "source": [
    "for (segfile, pid) in zip(segs, pids):\n",
    "    savename = 'liver_' + pid + '.nii.gz'\n",
    "    seg_obj = sitk.ReadImage( segfile )\n",
    "    \n",
    "    array = sitk.GetArrayFromImage(seg_obj)\n",
    "\n",
    "    array[array == 1] = 0\n",
    "    array[array == 2] = 1\n",
    "\n",
    "    binary_seg = sitk.GetImageFromArray(array)\n",
    "    binary_seg.CopyInformation(seg_obj)\n",
    "    \n",
    "    sitk.WriteImage(binary_seg, datasavepath + 'Labeltumor/' + savename, True) \n",
    "    print('Id ' + pid + ' generated')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step 4, Generate Body Masks"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [],
   "source": [
    "IMG_FOLDER_SAVE = datasavepath + 'Image/'\n",
    "imgs = glob.glob(IMG_FOLDER_SAVE + \"/liver_*.nii.gz\")\n",
    "imgs = [ fid for fid in sorted(imgs) ]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [],
   "source": [
    "threshold = -200"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Id 0 mask generated\n",
      "Id 1 mask generated\n",
      "Id 10 mask generated\n",
      "Id 100 mask generated\n",
      "Id 101 mask generated\n",
      "Id 102 mask generated\n",
      "Id 103 mask generated\n",
      "Id 104 mask generated\n",
      "Id 105 mask generated\n",
      "Id 106 mask generated\n",
      "Id 107 mask generated\n",
      "Id 108 mask generated\n",
      "Id 109 mask generated\n",
      "Id 11 mask generated\n",
      "Id 110 mask generated\n",
      "Id 111 mask generated\n",
      "Id 112 mask generated\n",
      "Id 113 mask generated\n",
      "Id 114 mask generated\n",
      "Id 115 mask generated\n",
      "Id 116 mask generated\n",
      "Id 117 mask generated\n",
      "Id 118 mask generated\n",
      "Id 119 mask generated\n",
      "Id 12 mask generated\n",
      "Id 120 mask generated\n",
      "Id 121 mask generated\n",
      "Id 122 mask generated\n",
      "Id 123 mask generated\n",
      "Id 124 mask generated\n",
      "Id 125 mask generated\n",
      "Id 126 mask generated\n",
      "Id 127 mask generated\n",
      "Id 128 mask generated\n",
      "Id 129 mask generated\n",
      "Id 13 mask generated\n",
      "Id 130 mask generated\n",
      "Id 14 mask generated\n",
      "Id 15 mask generated\n",
      "Id 16 mask generated\n",
      "Id 17 mask generated\n",
      "Id 18 mask generated\n",
      "Id 19 mask generated\n",
      "Id 2 mask generated\n",
      "Id 20 mask generated\n",
      "Id 21 mask generated\n",
      "Id 22 mask generated\n",
      "Id 23 mask generated\n",
      "Id 24 mask generated\n",
      "Id 25 mask generated\n",
      "Id 26 mask generated\n",
      "Id 27 mask generated\n",
      "Id 28 mask generated\n",
      "Id 29 mask generated\n",
      "Id 3 mask generated\n",
      "Id 30 mask generated\n",
      "Id 31 mask generated\n",
      "Id 32 mask generated\n",
      "Id 33 mask generated\n",
      "Id 34 mask generated\n",
      "Id 35 mask generated\n",
      "Id 36 mask generated\n",
      "Id 37 mask generated\n",
      "Id 38 mask generated\n",
      "Id 39 mask generated\n",
      "Id 4 mask generated\n",
      "Id 40 mask generated\n",
      "Id 41 mask generated\n",
      "Id 42 mask generated\n",
      "Id 43 mask generated\n",
      "Id 44 mask generated\n",
      "Id 45 mask generated\n",
      "Id 46 mask generated\n",
      "Id 47 mask generated\n",
      "Id 48 mask generated\n",
      "Id 49 mask generated\n",
      "Id 5 mask generated\n",
      "Id 50 mask generated\n",
      "Id 51 mask generated\n",
      "Id 52 mask generated\n",
      "Id 53 mask generated\n",
      "Id 54 mask generated\n",
      "Id 55 mask generated\n",
      "Id 56 mask generated\n",
      "Id 57 mask generated\n",
      "Id 58 mask generated\n",
      "Id 59 mask generated\n",
      "Id 6 mask generated\n",
      "Id 60 mask generated\n",
      "Id 61 mask generated\n",
      "Id 62 mask generated\n",
      "Id 63 mask generated\n",
      "Id 64 mask generated\n",
      "Id 65 mask generated\n",
      "Id 66 mask generated\n",
      "Id 67 mask generated\n",
      "Id 68 mask generated\n",
      "Id 69 mask generated\n",
      "Id 7 mask generated\n",
      "Id 70 mask generated\n",
      "Id 71 mask generated\n",
      "Id 72 mask generated\n",
      "Id 73 mask generated\n",
      "Id 74 mask generated\n",
      "Id 75 mask generated\n",
      "Id 76 mask generated\n",
      "Id 77 mask generated\n",
      "Id 78 mask generated\n",
      "Id 79 mask generated\n",
      "Id 8 mask generated\n",
      "Id 80 mask generated\n",
      "Id 81 mask generated\n",
      "Id 82 mask generated\n",
      "Id 83 mask generated\n",
      "Id 84 mask generated\n",
      "Id 85 mask generated\n",
      "Id 86 mask generated\n",
      "Id 87 mask generated\n",
      "Id 88 mask generated\n",
      "Id 89 mask generated\n",
      "Id 9 mask generated\n",
      "Id 90 mask generated\n",
      "Id 91 mask generated\n",
      "Id 92 mask generated\n",
      "Id 93 mask generated\n",
      "Id 94 mask generated\n",
      "Id 95 mask generated\n",
      "Id 96 mask generated\n",
      "Id 97 mask generated\n",
      "Id 98 mask generated\n",
      "Id 99 mask generated\n"
     ]
    }
   ],
   "source": [
    "for (imgfile, pid) in zip(imgs, pids):\n",
    "    savename = 'liver_' + pid + '.nii.gz'\n",
    "    img_obj = sitk.ReadImage( imgfile )\n",
    "    array = sitk.GetArrayFromImage(img_obj)\n",
    "    array = array > threshold\n",
    "\n",
    "    array_component = remove_all_but_the_largest_connected_component(array, [1], targetspacing)\n",
    "\n",
    "    array_mask = array_component[0].astype(int)\n",
    "    array_mask = binary_fill_holes(array_mask).astype(float)\n",
    "\n",
    "    mask_img = sitk.GetImageFromArray(array_mask)\n",
    "    mask_img.CopyInformation(img_obj)\n",
    "    \n",
    "    sitk.WriteImage(mask_img, datasavepath + 'mask/' + savename, True) \n",
    "    print('Id ' + pid + ' mask generated')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step 5, Generate Datafiles"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### An example to generate datafiles\n",
    "This will generate a datafile folder './datafiles/liver1/', which should be identical to what we use, e.g. './datafiles/liver0/'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 101,
   "metadata": {},
   "outputs": [],
   "source": [
    "datafilepath = './datafiles/liver1/'\n",
    "datapreprocessedpath = datasavepath + 'processed/'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 102,
   "metadata": {},
   "outputs": [],
   "source": [
    "if os.path.exists(datafilepath) == False:\n",
    "    os.mkdir(datafilepath)\n",
    "    os.mkdir(datafilepath + 'trainset')\n",
    "    os.mkdir(datafilepath + 'traintumorset')\n",
    "    os.mkdir(datafilepath + 'valtumor')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### normal training files"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 103,
   "metadata": {},
   "outputs": [],
   "source": [
    "Imgdatafiles = datafilepath + 'trainset/Imgpre-train.txt'\n",
    "Lbldatafiles = datafilepath + 'trainset/seg-train.txt'\n",
    "Maskfiles = datafilepath + 'trainset/mask-train.txt'"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### get the sample list that contains liver tumor"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 104,
   "metadata": {},
   "outputs": [],
   "source": [
    "samples_pids = []\n",
    "for (segfile, pid) in zip(segs, pids):\n",
    "    \n",
    "    seg_obj = sitk.ReadImage( segfile )\n",
    "    \n",
    "    array = sitk.GetArrayFromImage(seg_obj)\n",
    "    \n",
    "    if np.sum(array == 2) > 0:\n",
    "        samples_pids.append(int(pid))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 105,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "118"
      ]
     },
     "execution_count": 105,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(samples_pids)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 106,
   "metadata": {},
   "outputs": [],
   "source": [
    "samples_pids.sort()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 107,
   "metadata": {},
   "outputs": [],
   "source": [
    "import math\n",
    "train_pids = samples_pids[:math.ceil(len(samples_pids) * 0.7)]\n",
    "test_pids = samples_pids[math.ceil(len(samples_pids) * 0.7):]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 108,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "83"
      ]
     },
     "execution_count": 108,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(train_pids)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 109,
   "metadata": {},
   "outputs": [],
   "source": [
    "imgsprocessed_train = glob.glob(datapreprocessedpath + \"*.nii.gz\")\n",
    "imgsprocessed_train = [ fid for fid in sorted(imgsprocessed_train) ]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 110,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['./datapreprocessed/Task03_Liver/processed/liver_0.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_1.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_10.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_100.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_101.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_102.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_103.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_104.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_105.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_106.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_107.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_108.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_109.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_11.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_110.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_111.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_112.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_113.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_114.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_115.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_116.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_117.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_118.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_119.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_12.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_120.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_121.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_122.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_123.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_124.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_125.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_126.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_127.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_128.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_129.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_13.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_130.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_14.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_15.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_16.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_17.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_18.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_19.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_2.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_20.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_21.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_22.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_23.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_24.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_25.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_26.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_27.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_28.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_29.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_3.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_30.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_31.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_32.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_33.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_34.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_35.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_36.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_37.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_38.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_39.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_4.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_40.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_41.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_42.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_43.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_44.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_45.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_46.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_47.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_48.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_49.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_5.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_50.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_51.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_52.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_53.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_54.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_55.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_56.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_57.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_58.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_59.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_6.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_60.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_61.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_62.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_63.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_64.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_65.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_66.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_67.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_68.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_69.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_7.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_70.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_71.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_72.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_73.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_74.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_75.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_76.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_77.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_78.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_79.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_8.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_80.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_81.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_82.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_83.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_84.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_85.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_86.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_87.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_88.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_89.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_9.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_90.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_91.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_92.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_93.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_94.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_95.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_96.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_97.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_98.nii.gz',\n",
       " './datapreprocessed/Task03_Liver/processed/liver_99.nii.gz']"
      ]
     },
     "execution_count": 110,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "imgsprocessed_train"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 111,
   "metadata": {},
   "outputs": [],
   "source": [
    "# write image files\n",
    "with open(Imgdatafiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in train_pids:\n",
    "            f.write(filename)\n",
    "            f.write('\\n')\n",
    "# write label files\n",
    "with open(Lbldatafiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in train_pids:\n",
    "            f.write('./datapreprocessed/Task03_Liver/Label/' + filename.split(\"/\")[-1])\n",
    "            f.write('\\n')\n",
    "# write mask files\n",
    "with open(Maskfiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in train_pids:\n",
    "            f.write('./datapreprocessed/Task03_Liver/mask/' + filename.split(\"/\")[-1])\n",
    "            f.write('\\n')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### training files training files only with tumor regions"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 112,
   "metadata": {},
   "outputs": [],
   "source": [
    "Imgdatafiles = datafilepath + 'traintumorset/Imgpre-train.txt'\n",
    "Lbldatafiles = datafilepath + 'traintumorset/seg-train.txt'\n",
    "Maskfiles = datafilepath + 'traintumorset/mask-train.txt'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 113,
   "metadata": {},
   "outputs": [],
   "source": [
    "# write image files\n",
    "with open(Imgdatafiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in train_pids:\n",
    "            f.write(filename)\n",
    "            f.write('\\n')\n",
    "# write label files\n",
    "with open(Lbldatafiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in train_pids:\n",
    "            f.write('./datapreprocessed/Task03_Liver/Labeltumor/' + filename.split(\"/\")[-1])\n",
    "            f.write('\\n')\n",
    "# write mask files\n",
    "with open(Maskfiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in train_pids:\n",
    "            f.write('./datapreprocessed/Task03_Liver/mask/' + filename.split(\"/\")[-1])\n",
    "            f.write('\\n')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### test as the folder, note the source/target differences."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 114,
   "metadata": {},
   "outputs": [],
   "source": [
    "# test source data, as the folder.\n",
    "Imgdatafiles = datafilepath + 'valtumor/Imgpre-eval.txt'\n",
    "Lbldatafiles = datafilepath + 'valtumor/seg-eval.txt'\n",
    "Maskfiles = datafilepath + 'valtumor/mask-eval.txt'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 115,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "35"
      ]
     },
     "execution_count": 115,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(test_pids)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 116,
   "metadata": {},
   "outputs": [],
   "source": [
    "# write image files\n",
    "with open(Imgdatafiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in test_pids:\n",
    "            f.write(filename)\n",
    "            f.write('\\n')\n",
    "# write label files\n",
    "with open(Lbldatafiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in test_pids:\n",
    "            f.write('./datapreprocessed/Task03_Liver/Labeltumor/' + filename.split(\"/\")[-1])\n",
    "            f.write('\\n')\n",
    "# write mask files\n",
    "with open(Maskfiles, 'w') as f:\n",
    "    for filename in imgsprocessed_train: \n",
    "        if int(filename.split(\"/\")[-1].split(\"_\")[1][:-7]) in test_pids:\n",
    "            f.write('./datapreprocessed/Task03_Liver/mask/' + filename.split(\"/\")[-1])\n",
    "            f.write('\\n')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "colab",
   "language": "python",
   "name": "colab"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.7.16"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}