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GuangchuangYu

move some codes

Oct 24, 2024

8798543 · Oct 24, 2024

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Name		Name	Last commit message	Last commit date
parent directory ..
Date2decimal.Rd		Date2decimal.Rd	geom_motif #148	Aug 22, 2017
add_TREEINFO.Rd		add_TREEINFO.Rd	clean up code to remove R check notes	Apr 4, 2023
add_colorbar.Rd		add_colorbar.Rd	clip="off" and update docs	Dec 6, 2019
applyLayoutDaylight.Rd		applyLayoutDaylight.Rd	clean up code	Dec 14, 2017
as.polytomy.Rd		as.polytomy.Rd	update man files and fixed R check	Mar 23, 2022
collapse.Rd		collapse.Rd	clean up code to remove R check notes	Apr 4, 2023
decimal2Date.Rd		decimal2Date.Rd	geom_motif #148	Aug 22, 2017
expand.Rd		expand.Rd	update man files and fixed R check	Mar 23, 2022
facet-plot.Rd		facet-plot.Rd	add reference	Nov 20, 2019
facet_data.Rd		facet_data.Rd	add reference	Nov 20, 2019
facet_labeller.Rd		facet_labeller.Rd	update man files and fixed R check	Mar 23, 2022
facet_widths.Rd		facet_widths.Rd	geom_facet	May 23, 2019
flip.Rd		flip.Rd	update man files and fixed R check	Mar 23, 2022
geom-hilight.Rd		geom-hilight.Rd	clean up code to remove R check notes	Apr 4, 2023
geom_aline.Rd		geom_aline.Rd	rename size aesthetic according to ggplot2 (3.4.0)	Jul 7, 2022
geom_balance.Rd		geom_balance.Rd	update man files and fixed R check	Mar 23, 2022
geom_cladelab.Rd		geom_cladelab.Rd	update geom_striplab	Apr 22, 2022
geom_cladelabel.Rd		geom_cladelabel.Rd	update man files and fixed R check	Mar 23, 2022
geom_cladelabel2.Rd		geom_cladelabel2.Rd	update man files and fixed R check	Mar 23, 2022
geom_label2.Rd		geom_label2.Rd	update man files and fixed R check	Mar 23, 2022
geom_motif.Rd		geom_motif.Rd	roxygen2md	Nov 1, 2019
geom_nodelab.Rd		geom_nodelab.Rd	update man files and fixed R check	Mar 23, 2022
geom_nodelab2.Rd		geom_nodelab2.Rd	update man files and fixed R check	Mar 23, 2022
geom_nodepoint.Rd		geom_nodepoint.Rd	update man files and fixed R check	Mar 23, 2022
geom_point2.Rd		geom_point2.Rd	update man files and fixed R check	Mar 23, 2022
geom_range.Rd		geom_range.Rd	rename size aesthetic according to ggplot2 (3.4.0)	Jul 7, 2022
geom_rootedge.Rd		geom_rootedge.Rd	update man files and fixed R check	Mar 23, 2022
geom_rootpoint.Rd		geom_rootpoint.Rd	update man files and fixed R check	Mar 23, 2022
geom_segment2.Rd		geom_segment2.Rd	update man files and fixed R check	Mar 23, 2022
geom_strip.Rd		geom_strip.Rd	update man files and fixed R check	Mar 23, 2022
geom_striplab.Rd		geom_striplab.Rd	update geom_striplab	Apr 22, 2022
geom_taxalink.Rd		geom_taxalink.Rd	rename size aesthetic according to ggplot2 (3.4.0)	Jul 7, 2022
geom_text2.Rd		geom_text2.Rd	clip="off" and update docs	Dec 6, 2019
geom_tiplab.Rd		geom_tiplab.Rd	rename size aesthetic according to ggplot2 (3.4.0)	Jul 7, 2022
geom_tiplab2.Rd		geom_tiplab2.Rd	update man files and fixed R check	Mar 23, 2022
geom_tippoint.Rd		geom_tippoint.Rd	update man files and fixed R check	Mar 23, 2022
geom_tree.Rd		geom_tree.Rd	size to linewidth in geom_tree	Jul 11, 2023
geom_tree2.Rd		geom_tree2.Rd	geom_motif #148	Aug 22, 2017
geom_treescale.Rd		geom_treescale.Rd	update man files and fixed R check	Mar 23, 2022
geom_zoom_clade.Rd		geom_zoom_clade.Rd	update man files and fixed R check	Mar 23, 2022
get.path.Rd		get.path.Rd	clean up code	Dec 14, 2017
getNodeAngle.df.Rd		getNodeAngle.df.Rd	clip="off" and update docs	Dec 6, 2019
getNodesBreadthFirst.df.Rd		getNodesBreadthFirst.df.Rd	clean up code	Dec 14, 2017
getSubtree.Rd		getSubtree.Rd	clean up code	Dec 14, 2017
getSubtree.df.Rd		getSubtree.df.Rd	update docs	Jan 23, 2018
getSubtreeUnrooted.Rd		getSubtreeUnrooted.Rd	update docs	Jan 23, 2018
getSubtreeUnrooted.df.Rd		getSubtreeUnrooted.df.Rd	clean up code	Dec 14, 2017
getTreeArcAngles.Rd		getTreeArcAngles.Rd	clip="off" and update docs	Dec 6, 2019
get_clade_position.Rd		get_clade_position.Rd	geom_motif #148	Aug 22, 2017
get_heatmap_column_position.Rd		get_heatmap_column_position.Rd	roxygen2md	Nov 1, 2019
get_taxa_name.Rd		get_taxa_name.Rd	update man files and fixed R check	Mar 23, 2022
ggdensitree.Rd		ggdensitree.Rd	clean up code to remove R check notes	Apr 4, 2023
ggexpand.Rd		ggexpand.Rd	update man files and fixed R check	Mar 23, 2022
ggtree-format-painter.Rd		ggtree-format-painter.Rd	clip="off" and update docs	Dec 6, 2019
ggtree-ggproto.Rd		ggtree-ggproto.Rd	comment original geom_hilight	Jul 23, 2020
ggtree-package.Rd		ggtree-package.Rd	mv %<+% to ggfun package	May 26, 2024
ggtree.Rd		ggtree.Rd	extend the layout funtion to supporting the graph object, phylo or tr…	Jul 17, 2024
gheatmap.Rd		gheatmap.Rd	update man files and fixed R check	Mar 23, 2022
gzoom-methods.Rd		gzoom-methods.Rd	clip="off" and update docs	Dec 6, 2019
gzoom.phylo.Rd		gzoom.phylo.Rd	remove gzoom function	Aug 8, 2019
inset.Rd		inset.Rd	fix bug of layoutEqualAngle	Jul 6, 2022
label_pad.Rd		label_pad.Rd	update man files and fixed R check	Mar 23, 2022
layoutDaylight.Rd		layoutDaylight.Rd	fix bug of layoutEqualAngle	Jul 6, 2022
layoutEqualAngle.Rd		layoutEqualAngle.Rd	bug fixed of layoutEqualAngle	Apr 9, 2020
msaplot.Rd		msaplot.Rd	update man files and fixed R check	Mar 23, 2022
multiplot.Rd		multiplot.Rd	update man files and fixed R check	Mar 23, 2022
nodebar.Rd		nodebar.Rd	update man files and fixed R check	Mar 23, 2022
nodepie.Rd		nodepie.Rd	update	Jun 20, 2022
open_tree.Rd		open_tree.Rd	update man files and fixed R check	Mar 23, 2022
range_format.Rd		range_format.Rd	clip="off" and update docs	Dec 6, 2019
reexports.Rd		reexports.Rd	move some codes	Oct 24, 2024
revts.Rd		revts.Rd	update man files and fixed R check	Mar 23, 2022
rotate.Rd		rotate.Rd	update man files and fixed R check	Mar 23, 2022
rotateTreePoints.Rd		rotateTreePoints.Rd	clip="off" and update docs	Dec 6, 2019
rotate_tree.Rd		rotate_tree.Rd	update man files and fixed R check	Mar 23, 2022
scale-color-subtree.Rd		scale-color-subtree.Rd	move scale-color-subtree to ggtreeDendro	Sep 23, 2022
scaleClade.Rd		scaleClade.Rd	update man files and fixed R check	Mar 23, 2022
scale_color-methods.Rd		scale_color-methods.Rd	bug fixed of viewClade	Aug 7, 2018
scale_x_ggtree.Rd		scale_x_ggtree.Rd	update man files and fixed R check	Mar 23, 2022
scale_x_range.Rd		scale_x_range.Rd	update man files and fixed R check	Mar 23, 2022
set_hilight_legend.Rd		set_hilight_legend.Rd	remove functions	Jul 28, 2020
theme_dendrogram.Rd		theme_dendrogram.Rd	update man files and fixed R check	Mar 23, 2022
theme_inset.Rd		theme_inset.Rd	update man files and fixed R check	Mar 23, 2022
theme_tree.Rd		theme_tree.Rd	update man files and fixed R check	Mar 23, 2022
theme_tree2.Rd		theme_tree2.Rd	update man files and fixed R check	Mar 23, 2022
tree-layout.Rd		tree-layout.Rd	update man files and fixed R check	Mar 23, 2022
viewClade.Rd		viewClade.Rd	update man files and fixed R check	Mar 23, 2022
xlim_expand.Rd		xlim_expand.Rd	update man files and fixed R check	Mar 23, 2022
xlim_tree.Rd		xlim_tree.Rd	update man files and fixed R check	Mar 23, 2022
zoomClade.Rd		zoomClade.Rd	fixed R check	Apr 4, 2023
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