control

##### list_essential_parameters
#python src/core/main.py -h;python src/core/main.py summary -h; python src/core/main.py process -h;
#python src/core/main.py -h
#python src/core/main.py summary -h
#python src/core/main.py process -h
#
#python src/core/main.py process -i data/example/MMAP_example.fasta
#python src/core/main.py summary -m data/example/


glimmer_pdir=./data/Glimmer/
genovo_pdir= ./data/Genovo
blast_pdir=./data/BLAST/
mine_pdir=./data/MINE/

# blast_db should be full path to the directory containing the BLAST+ formatted sequence DB
blast_db=~/Desktop/BLAST/go-seqdb/go-seqdb

##### list_optional_shared
#check_exist=True

## list_of_genovo_options
#genovo_outfile=genovoOut3
genovo_noI= 10
genovo_thresh= 250

# list_of_glimmer_options
## glimmer_infile=MMAP_example.genovo
#glimmer_outfile=glimmerOut
#extract_outfile=extractOut

# blast_infile=1k_out_out.orfs
#blast_e_value=1e-15
#blast_thread=3
#blast_outfile=blastOut
#blast_comparison_file=1stRun_out_out.orfs.csv

##### list_optional_mine_only
# mine_comparison_style=-allPairs
# mine_jobID=PriA
# mine_infile=MinIn
# mine_cv=0.0
# mine_clumps=23