diff --git a/requirements.yml b/requirements.yml index 3488131..2d0cf0a 100644 --- a/requirements.yml +++ b/requirements.yml @@ -13,7 +13,6 @@ dependencies: - conda-forge::numpy>=1.16.0 - conda-forge::scipy - conda-forge::r-base>=4.0.0 - - conda-forge::openssl - fastp - umi_tools - STAR>=2.5.1 diff --git a/xpresspipe/Rmetagene.r b/xpresspipe/Rmetagene.r index 308c6b0..3b814df 100644 --- a/xpresspipe/Rmetagene.r +++ b/xpresspipe/Rmetagene.r @@ -46,8 +46,8 @@ packages <- c("Rsamtools", "GenomicAlignments") # Install each package if missing for (pkg in packages) { install_if_missing(pkg) + library(pkg) } -library(GenomicAlignments) # Set globals chromosome <- 'chromosome'