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CITATION.cff
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# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: Micro-Meta App - OMERO plugin
message: >-
If you use this software please cite both the software using the metadata indicated below, and the papers as indicated in the scope of each reference
type: software
authors:
- given-names: Alessandro
family-names: Rigano
email: [email protected]
affiliation: >-
Program in Molecular Medicine, UMass Chan
Medical School, Worcester MA 01605, USA
- given-names: Balashov
family-names: Alexander
affiliation: >-
Department of Biomedical Informatics, Harvard
Medical School, Boston, MA 02115, USA
- affiliation: >-
Department of Biomedical Informatics, Harvard
Medical School, Boston, MA 02115, USA
given-names: Shannon
family-names: Ehmsen
- given-names: Serkan Utku
family-names: Ozturk
orcid: 'https://orcid.org/0000-0001-8835-787X'
affiliation: >-
Karya SMD + Department of Biomedical
Informatics, Harvard Medical School, Boston, MA
02115, USA
- given-names: Alver
family-names: Burak
orcid: >-
https://orcid.org/https://orcid.org/0000-0002-5019-7652
affiliation: >-
Department of Biomedical Informatics, Harvard
Medical School, Boston, MA 02115, USA
- affiliation: >-
Program in Molecular Medicine, UMass Chan
Medical School, Worcester MA 01605, USA
orcid: >-
https://orcid.org/https://orcid.org/0000-0002-1069-1816
family-names: Strambio-De-Castillia
given-names: Caterina
email: [email protected]
repository-code: 'https://github.com/WU-BIMAC/MicroMetaApp-Omero'
url: 'https://wu-bimac.github.io/MicroMetaApp.github.io/'
doi: 10.5281/zenodo.4750762
abstract: >-
Micro-Meta App is an intuitive Graphical User Interface (GUI)-based open-source software that helps scientists to interactively build graphical representations of microscope hardware by dragging-and-dropping individual components onto the workspace and entering the relevant attribute values based on the 4D Nucleome (4DN) - BioImaging North America (BINA) Microscopy Metadata guidelines that scale experimental complexity. From this, Micro-Meta App automatically generates structured Microscope files that can be saved locally, consumed by existing data portals, shared with other scientists, and used repeatedly whenever the same microscope is used to produce image data. Thus, when the image acquisition settings utilized to produce a given image dataset need to be recorded, the user selects the desired image data alongside the relevant Microscope file. Then, Micro-Meta App imports the relevant metadata from the header of image data files to be annotated and interactively guides the user through the collection of all missing attributes. Finally, the App generates a Settings-file, which coupled with the Microscope-file contains comprehensive descriptions of the conditions utilized to produce individual microscopy datasets.
keywords:
- metadata
- microscopy
- standards
- data model
- OME
- open science
- reproducibility
- quality control
- data provenance
license: GPL-3.0-or-later
version: 1.2.2-b1-1 stable beta
date-released: '2021-05-11'
references:
- authors:
- family-names: Rigano
given-names: Alessandro
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
email: [email protected]
- family-names: Ehmsen
given-names: Shannon
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Ozturk
given-names: Serkan Utku
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
orcid: https://orcid.org/0000-0001-8835-787
- family-names: Ryan
given-names: Joel
affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
- family-names: Balashov
given-names: Alexander
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Hammer
given-names: Mathias
affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
- family-names: Kirli
given-names: Koray
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Boehm
given-names: Ulrike
affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
orcid: https://orcid.org/0000-0001-7471-2244
- family-names: Brown
given-names: Claire M.
affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
orcid: https://orcid.org/0000-0003-1622-663X
- family-names: Bellve
given-names: Karl
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
- family-names: Chambers
given-names: James
affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
orcid: https://orcid.org/0000-0003-3883-8215
- family-names: Cosolo
given-names: Andrea
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Coleman
given-names: Robert
affiliation: Gruss-Lipper Biophotonics Center, Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY 10461
- family-names: Faklaris
given-names: Orestis
affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
orcid: https://orcid.org/0000-0001-5965-5405
- family-names: Fogarty
given-names: Kevin
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
- family-names: Guilbert
given-names: Thomas
affiliation: Plateforme IMAG'IC, Institut Cochin, Inserm U1016-CNRS UMR8104-Université de Paris, 75014 Paris
- family-names: Hamacher
given-names: Anna B.
affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
- family-names: Itano
given-names: Michelle
affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
- family-names: Keeley
given-names: Daniel P.
affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
- family-names: Kunis
given-names: Susanne
affiliation: Department of Biology/Chemistry and Centre for Cellular Nanoanalytics, University Osnabrueck, 49076 Osnabrück, Germany
- family-names: Lacoste
given-names: Judith
affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
- family-names: Laude
given-names: Alex
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: https://orcid.org/0000-0002-3853-1187
- family-names: Ma
given-names: Willa Y.
affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
- family-names: Marcello
given-names: Marco
affiliation: Center for Cell Imaging, University of Liverpool, Liverpool, L69 3BE, UK
- family-names: Montero-Llopis
given-names: Paula
affiliation: Microscopy Resources of the North Quad, University of Harvard Medical School, Boston, MA 02115
orcid: https://orcid.org/0000-0002-5983-2296
- family-names: Nelson
given-names: Glyn
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: http://orcid.org/0000-0002-1895-4772
- family-names: Nitschke
given-names: Roland
affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
orcid: https://orcid.org/0000-0002-9397-8475
- family-names: Pimentel
given-names: Jaime A.
affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
orcid: https://orcid.org/0000-0001-8569-0466
- family-names: Weidtkamp-Peters
given-names: Stefanie
affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
- family-names: Park
given-names: Peter
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Alver
given-names: Burak
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
orcid: https://orcid.org/https://orcid.org/0000-0002-5019-7652
- family-names: Grunwald
given-names: David
affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
- family-names: Strambio-De-Castillia
given-names: Caterina
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
email: [email protected]
orcid: https://orcid.org/0000-0002-1069-1816
doi: 10.1038/s41592-021-01315-z
journal: "Nature Methods"
volume: 18
pages: 1489
scope: "Cite this paper every time you use this software."
title: "Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications"
type: article
year: 2021
- authors:
- family-names: Rigano
given-names: Alessandro
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
email: [email protected]
- family-names: Ehmsen
given-names: Shannon
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Ozturk
given-names: Serkan Utku
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
orcid: https://orcid.org/0000-0001-8835-787
- family-names: Ryan
given-names: Joel
affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
- family-names: Balashov
given-names: Alexander
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Hammer
given-names: Mathias
affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
- family-names: Kirli
given-names: Koray
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Boehm
given-names: Ulrike
affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
orcid: https://orcid.org/0000-0001-7471-2244
- family-names: Brown
given-names: Claire M.
affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
orcid: https://orcid.org/0000-0003-1622-663X
- family-names: Chambers
given-names: James
affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
orcid: https://orcid.org/0000-0003-3883-8215
- family-names: Coleman
given-names: Robert
affiliation: Gruss-Lipper Biophotonics Center, Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY 10461
- family-names: Cosolo
given-names: Andrea
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Faklaris
given-names: Orestis
affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
orcid: https://orcid.org/0000-0001-5965-5405
- family-names: Fogarty
given-names: Kevin
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
- family-names: Guilbert
given-names: Thomas
affiliation: Plateforme IMAG'IC, Institut Cochin, Inserm U1016-CNRS UMR8104-Université de Paris, 75014 Paris
- family-names: Hamacher
given-names: Anna B.
affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
- family-names: Itano
given-names: Michelle
affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
- family-names: Keeley
given-names: Daniel P.
affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
- family-names: Kunis
given-names: Susanne
affiliation: Department of Biology/Chemistry and Centre for Cellular Nanoanalytics, University Osnabrueck, 49076 Osnabrück, Germany
- family-names: Lacoste
given-names: Judith
affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
- family-names: Laude
given-names: Alex
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: https://orcid.org/0000-0002-3853-1187
- family-names: Ma
given-names: Willa
affiliation: UNC Neuroscience Microscopy Core Facility, Chapel Hill, NC 27599-7250
- family-names: Marcello
given-names: Marco
affiliation: Center for Cell Imaging, University of Liverpool, Liverpool, L69 3BE, UK
- family-names: Montero-Llopis
given-names: Paula
affiliation: Microscopy Resources of the North Quad, University of Harvard Medical School, Boston, MA 02115
orcid: https://orcid.org/0000-0002-5983-2296
- family-names: Nelson
given-names: Glyn
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: http://orcid.org/0000-0002-1895-4772
- family-names: Nitschke
given-names: Roland
affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
orcid: https://orcid.org/0000-0002-9397-8475
- family-names: Pimentel
given-names: Jaime A.
affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
orcid: https://orcid.org/0000-0001-8569-0466
- family-names: Weidtkamp-Peters
given-names: Stefanie
affiliation: Center for Advanced Imaging, Heinrich-Heine University Duesseldorf, 40225 Düsseldorf, Germany
- family-names: Park
given-names: Peter
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
- family-names: Alver
given-names: Burak
affiliation: Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA
orcid: https://orcid.org/https://orcid.org/0000-0002-5019-7652
- family-names: Grunwald
given-names: David
affiliation: RNA Therapeutics Institute, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
- family-names: Strambio-De-Castillia
given-names: Caterina
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester MA 01605, USA
email: [email protected]
orcid: https://orcid.org/0000-0002-1069-1816
doi: 10.1101/2021.05.31.44638
journal: "BioRxiv.org"
scope: "Cite this paper every time you use this software."
title: "Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications"
type: article
year: 2021
- authors:
- family-names: Mathias
given-names: Hammer
affiliation: RNA Therapeutic Institute, University of Massachusetts Chan Medical School
- family-names: Maximiliaan
given-names: Huisman
affiliation: RNA Therapeutic Institute, University of Massachusetts Chan Medical School
orcid: https://orcid.org/0000-0003-3363-8791
- family-names: Rigano
given-names: Alessandro
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School
- family-names: Boehm
given-names: Ulrike
affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
orcid: https://orcid.org/0000-0001-7471-2244
- family-names: Chambers
given-names: James
affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
orcid: https://orcid.org/0000-0003-3883-8215
- family-names: Gaudreault
given-names: Nathalie
affiliation: Allen Institute for Cell Science, Seattle, WA 98109, USA
- family-names: North
given-names: Alison J.
affiliation: The Rockefeller University, New York, NY 10065, USA
orcid: https://orcid.org/0000-0002-0577-7949
- family-names: Pimentel
given-names: Arturo
affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
orcid: https://orcid.org/0000-0001-8569-0466
- family-names: Sudar
given-names: Damir
affiliation: Quantitative Imaging Systems LLC, Portland, OR 97209, USA
orcid: https://orcid.org/0000-0002-2510-7272
- family-names: Bajcsy
given-names: Peter
affiliation: National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
orcid: https://orcid.org/0000-0002-6968-2615
- family-names: Brown
given-names: Claire M.
affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
orcid: https://orcid.org/0000-0003-1622-663X
- family-names: Corbett
given-names: Alexander D.
affiliation: Department of Physics and Astronomy, University of Exeter, Exeter, EX4 4QL, UK
orcid: https://orcid.org/0000-0003-1645-5475
- family-names: Faklaris
given-names: Orestis
affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
orcid: https://orcid.org/0000-0001-5965-5405
- family-names: Lacoste
given-names: Judith
affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
- family-names: Laude
given-names: Alex
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: https://orcid.org/0000-0002-3853-1187
- family-names: Nelson
given-names: Glyn
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: http://orcid.org/0000-0002-1895-4772
- family-names: Nitschke
given-names: Roland
affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
orcid: https://orcid.org/0000-0002-9397-8475
- family-names: Gopinathan
given-names: Renu
affiliation: RNA Therapeutics Institute, UMass Medical School, Worcester MA 01605, USA
- family-names: Farzam
given-names: Farzin
affiliation: RNA Therapeutics Institute, UMass Medical School, Worcester MA 01605, USA
- family-names: Carlas
given-names: Smith
affiliation: Dutch Optics Center, Technische Universiteit Delft, Delft, 2600 AA, The Netherlands
- family-names: David
given-names: Grunwald
affiliation: University of Massachusetts Medical School
- family-names: Strambio-De-Castillia
given-names: Caterina
affiliation: University of Massachusetts Medical School
email: [email protected]
orcid: https://orcid.org/0000-0002-1069-1816
doi: 10.1101/2021.04.25.441198
journal: "BioRxiv.org"
scope: "Cite this paper when you want to discuss the background context for this software."
title: "Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model"
type: article
year: 2021
- authors:
- family-names: Maximiliaan
given-names: Huisman
affiliation: University of Massachusetts Medical School
- family-names: Mathias
given-names: Hammer
affiliation: University of Massachusetts Medical School
orcid: https://orcid.org/0000-0003-3363-8791
- family-names: Rigano
given-names: Alessandro
affiliation: University of Massachusetts Medical School
- family-names: Boehm
given-names: Ulrike
affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
orcid: https://orcid.org/0000-0001-7471-2244
- family-names: Chambers
given-names: James
affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
orcid: https://orcid.org/0000-0003-3883-8215
- family-names: Gaudreault
given-names: Nathalie
affiliation: Allen Institute for Cell Science, Seattle, WA 98109, USA
- family-names: North
given-names: Alison J.
affiliation: The Rockefeller University, New York, NY 10065, USA
orcid: https://orcid.org/0000-0002-0577-7949
- family-names: Pimentel
given-names: Arturo
affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
orcid: https://orcid.org/0000-0001-8569-0466
- family-names: Sudar
given-names: Damir
affiliation: Quantitative Imaging Systems LLC, Portland, OR 97209, USA
orcid: https://orcid.org/0000-0002-2510-7272
- family-names: Bajcsy
given-names: Peter
affiliation: National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
orcid: https://orcid.org/0000-0002-6968-2615
- family-names: Brown
given-names: Claire M.
affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
orcid: https://orcid.org/0000-0003-1622-663X
- family-names: Corbett
given-names: Alexander D.
affiliation: Department of Physics and Astronomy, University of Exeter, Exeter, EX4 4QL, UK
orcid: https://orcid.org/0000-0003-1645-5475
- family-names: Faklaris
given-names: Orestis
affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
orcid: https://orcid.org/0000-0001-5965-5405
- family-names: Lacoste
given-names: Judith
affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
- family-names: Laude
given-names: Alex
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: https://orcid.org/0000-0002-3853-1187
- family-names: Nelson
given-names: Glyn
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: http://orcid.org/0000-0002-1895-4772
- family-names: Nitschke
given-names: Roland
affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
orcid: https://orcid.org/0000-0002-9397-8475
- family-names: David
given-names: Grunwald
affiliation: University of Massachusetts Medical School
- family-names: Strambio-De-Castillia
given-names: Caterina
affiliation: University of Massachusetts Medical School
email: [email protected]
orcid: https://orcid.org/0000-0002-1069-1816
url: https://arxiv.org/abs/1910.11370
journal: "arXiv.org"
scope: "Cite this paper when you want to discuss the background context for this software."
title: "A perspective on Microscopy Metadata: data provenance and quality control"
type: article
year: 2021
- authors:
- family-names: Mathias
given-names: Hammer
affiliation: RNA Therapeutic Institute, University of Massachusetts Chan Medical School
- family-names: Maximiliaan
given-names: Huisman
affiliation: RNA Therapeutic Institute, University of Massachusetts Chan Medical School
orcid: https://orcid.org/0000-0003-3363-8791
- family-names: Rigano
given-names: Alessandro
affiliation: Program in Molecular Medicine, University of Massachusetts Chan Medical School
- family-names: Boehm
given-names: Ulrike
affiliation: Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
orcid: https://orcid.org/0000-0001-7471-2244
- family-names: Chambers
given-names: James
affiliation: Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
orcid: https://orcid.org/0000-0003-3883-8215
- family-names: Gaudreault
given-names: Nathalie
affiliation: Allen Institute for Cell Science, Seattle, WA 98109, USA
- family-names: North
given-names: Alison J.
affiliation: The Rockefeller University, New York, NY 10065, USA
orcid: https://orcid.org/0000-0002-0577-7949
- family-names: Pimentel
given-names: Arturo
affiliation: Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
orcid: https://orcid.org/0000-0001-8569-0466
- family-names: Sudar
given-names: Damir
affiliation: Quantitative Imaging Systems LLC, Portland, OR 97209, USA
orcid: https://orcid.org/0000-0002-2510-7272
- family-names: Bajcsy
given-names: Peter
affiliation: National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
orcid: https://orcid.org/0000-0002-6968-2615
- family-names: Brown
given-names: Claire M.
affiliation: Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
orcid: https://orcid.org/0000-0003-1622-663X
- family-names: Corbett
given-names: Alexander D.
affiliation: Department of Physics and Astronomy, University of Exeter, Exeter, EX4 4QL, UK
orcid: https://orcid.org/0000-0003-1645-5475
- family-names: Faklaris
given-names: Orestis
affiliation: Biocampus, CNRS UMS 3426, Montpellier 34293, France
orcid: https://orcid.org/0000-0001-5965-5405
- family-names: Lacoste
given-names: Judith
affiliation: MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
- family-names: Laude
given-names: Alex
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: https://orcid.org/0000-0002-3853-1187
- family-names: Nelson
given-names: Glyn
affiliation: Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
orcid: http://orcid.org/0000-0002-1895-4772
- family-names: Nitschke
given-names: Roland
affiliation: Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
orcid: https://orcid.org/0000-0002-9397-8475
- family-names: Gopinathan
given-names: Renu
affiliation: RNA Therapeutics Institute, UMass Medical School, Worcester MA 01605, USA
- family-names: Farzam
given-names: Farzin
affiliation: RNA Therapeutics Institute, UMass Medical School, Worcester MA 01605, USA
- family-names: Carlas
given-names: Smith
affiliation: Dutch Optics Center, Technische Universiteit Delft, Delft, 2600 AA, The Netherlands
- family-names: David
given-names: Grunwald
affiliation: University of Massachusetts Medical School
- family-names: Strambio-De-Castillia
given-names: Caterina
affiliation: University of Massachusetts Medical School
email: [email protected]
orcid: https://orcid.org/0000-0002-1069-1816
doi: 10.1038/s41592-021-01327-9
journal: "Nature Methods"
volume: 18
pages: 1428
scope: "Cite this paper when you want to discuss the background context for this software."
title: "Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model"
type: article
year: 2021