update correlation to use new getCollectionData api

VEuPathDB · Apr 22, 2024 · 91a3a16 · 91a3a16
1 parent 4206f15
commit 91a3a16
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/method-correlation.R b/R/method-correlation.R
@@ -350,7 +350,7 @@ function(
   data1 <- pruneFeatures(data1, predicateFactory('variance', varianceThreshold), verbose)
   data1 <- pruneFeatures(data1, predicateFactory('sd', stdDevThreshold), verbose)
 
-  values <- getCollectionData(data1, FALSE, FALSE, verbose)
+  values <- getCollectionData(data1, variableNames = NULL, ignoreImputeZero = FALSE, includeIds = FALSE, verbose = verbose)
   if (metadataIsFirst) {
     corrResult <- correlation(
       getSampleMetadata(data1, TRUE, FALSE),