From 29c61c2a6ac60caf54870b11115846e826a97c97 Mon Sep 17 00:00:00 2001
From: asizemore <annsize@seas.upenn.edu>
Date: Fri, 18 Oct 2024 18:14:47 -0400
Subject: [PATCH] change refs from MicrobiomeDB to VEuPathDB

---
 DESCRIPTION                 | 6 +++---
 README.md                   | 8 ++++----
 man/veupathUtils-package.Rd | 6 +++---
 3 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 77c09f5..3eccfd1 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: veupathUtils
-Title: General Helper Functions for MicrobiomeDB Projects
+Title: General Helper Functions for VEuPathDB Projects
 Version: 2.6.7
 Authors@R: 
     c(person(given = "Danielle",
@@ -26,8 +26,8 @@ Depends:
     jsonlite
 Remotes:
     zdk123/SpiecEasi
-URL: https://github.com/microbiomeDB/veupathUtils
-BugReports: https://github.com/microbiomeDB/veupathUtils/issues
+URL: https://github.com/VEuPathDB/veupathUtils
+BugReports: https://github.com/VEuPathDB/veupathUtils/issues
 Description: veupathUtils contains various R helper functions intended to be useful across a variety of projects, including the plot.data and microbiomeComputations packages.
 License: Apache License (>= 2)
 Encoding: UTF-8
diff --git a/README.md b/README.md
index 033c1ae..b3536b5 100644
--- a/README.md
+++ b/README.md
@@ -1,17 +1,17 @@
 <!-- badges: start -->
-  [![R-CMD-check](https://github.com/microbiomeDB/veupathUtils/workflows/R-CMD-check/badge.svg)](https://github.com/microbiomeDB/veupathUtils/actions)
+  [![R-CMD-check](https://github.com/VEuPathDB/veupathUtils/workflows/R-CMD-check/badge.svg)](https://github.com/VEuPathDB/veupathUtils/actions)
   <!-- badges: end -->
 
 # veupathUtils
 
-veupathUtils is an R package which provides helper functions for solving common problems in the MicrobiomeDB project.
+veupathUtils is an R package which provides helper functions for solving common problems in the VEuPathDB project.
 
 ## Installation
 
 Use the R package [remotes](https://cran.r-project.org/web/packages/remotes/index.html) to install veupathUtils. From the R command prompt:
 
 ```R
-remotes::install_github('microbiomeDB/veupathUtils')
+remotes::install_github('VEuPathDB/veupathUtils')
 ```
 
 ## Usage
@@ -19,7 +19,7 @@ This package is primarily intended for use as a dependency in other R packages.
 dependent package must follow these steps:
 1. add ```veupathUtils``` to the ```Imports``` section of the dependent package's ```DESCRIPTION``` file.
 2. add a ```Remotes``` section to the dependent package's ```DESCRIPTION``` file.
-3. add ```microbiomeDB/veupathUtils``` to the ```Remotes``` section of the dependent package's ```DESCRIPTION``` file.
+3. add ```VEuPathDB/veupathUtils``` to the ```Remotes``` section of the dependent package's ```DESCRIPTION``` file.
 4. add ```#' @import veupathUtils``` to the dependent package's package-level documentation file (usually called ```{mypackage}-package.R```).
 5. run ```devtools::document()```.
 
diff --git a/man/veupathUtils-package.Rd b/man/veupathUtils-package.Rd
index d60a5da..73c3547 100644
--- a/man/veupathUtils-package.Rd
+++ b/man/veupathUtils-package.Rd
@@ -4,15 +4,15 @@
 \name{veupathUtils-package}
 \alias{veupathUtils}
 \alias{veupathUtils-package}
-\title{veupathUtils: General Helper Functions for MicrobiomeDB Projects}
+\title{veupathUtils: General Helper Functions for VEuPathDB Projects}
 \description{
 veupathUtils contains various R helper functions intended to be useful across a variety of projects, including the plot.data and microbiomeComputations packages.
 }
 \seealso{
 Useful links:
 \itemize{
-  \item \url{https://github.com/microbiomeDB/veupathUtils}
-  \item Report bugs at \url{https://github.com/microbiomeDB/veupathUtils/issues}
+  \item \url{https://github.com/VEuPathDB/veupathUtils}
+  \item Report bugs at \url{https://github.com/VEuPathDB/veupathUtils/issues}
 }
 
 }