54_orthophyletic.md

identifier	listIconKey	listTitle	descriptionTitle	tags	title	permalink	category
phyleticPattern	sitemap fa-rotate-270	Phyletic Pattern Search	Phyletic Pattern Search	tutorial	Phyletic Pattern Search	#phyleticpattern	OrthoMCL

<style> .search-strategies-feature { margin: auto; } .search-strategies-feature--panels { display: flex; flex-wrap: wrap; align-items: flex-start; counter-reset: panel; } .search-strategies-feature--panels > * { overflow: hidden; margin: 0 2em; } .search-strategies-feature--panels > * > div { margin-top: 1em; margin-left: 2em; position: relative; } .search-strategies-feature--panels > * img { margin-left: 2em; } .search-strategies-feature--panels > * > div:before { counter-increment: panel; content: counter(panel); background: #3171d8; border-radius: 1em; height: 1.5em; width: 1.5em; display: inline-flex; justify-content: center; align-items: center; margin-right: .5em; color: white; position: absolute; left: -2em; top: -0.25em; } #topright { text-align: right; } </style>

Identify Ortholog Groups based on Phyletic Pattern

The phyletic pattern search allows you to identify orthology groups that have a particular phyletic pattern, e.g., that include or exclude taxa or species that you specify. The "Identify Ortholog Groups based on Phyletic Pattern" provides two ways to define the desired phyletic pattern:

Using an expression that is a flexible and powerful way to identify ortholog groups with a certain conservation pattern. The pattern is used to identify groups based on whether proteins from specific taxa are present or absent. Also, the pattern finds groups with a certain copy number (e.g., duplications) within specified taxa.

Using an expandable and searchable tree menu. Click on the circles to include or exclude taxa.