-
Notifications
You must be signed in to change notification settings - Fork 5
/
3_regroup_data.yml
163 lines (145 loc) · 20.2 KB
/
3_regroup_data.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
packages:
- scipiper
- dplyr
- yaml
- dataRetrieval
- assertthat
- glmtools
- ggplot2
file_extensions:
- ind
sources:
- 3_regroup_data/src/regroup.R
- 3_regroup_data/src/summary_functions.R
target_default: observation_summaries
include:
- 1_data_s3_assimilate.yml
- 1_data_wqp.yml
- 2_get_model_files.yml
targets:
observation_summaries:
depends:
- 3_regroup_data/out/data_summary_plots.pdf
- 3_regroup_data/out/data_summary_table.csv
3_regroup_data/out/nhd_120052238.rds.ind:
command: regroup_data(nhd_id = I("nhd_120052238"), state_src = I("DOW"),
state_id = I(c('69084500')), wqp_file = '1_data_wqp/out/nhd_120052238.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_120052238.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_120052238.rds:
command: s3_get('3_regroup_data/out/nhd_120052238.rds.ind')
3_regroup_data/out/nhd_4817675.rds.ind:
command: regroup_data(nhd_id = I("nhd_4817675"), state_src = I("DOW"),
state_id = I(c('11020300','11020301')), wqp_file = '1_data_wqp/out/nhd_4817675.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_4817675.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_4817675.rds:
command: s3_get('3_regroup_data/out/nhd_4817675.rds.ind')
3_regroup_data/out/nhd_4819397.rds.ind:
command: regroup_data(nhd_id = I("nhd_4819397"), state_src = I("DOW"),
state_id = I(c('11020302')), wqp_file = '1_data_wqp/out/nhd_4819397.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_4819397.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_4819397.rds:
command: s3_get('3_regroup_data/out/nhd_4819397.rds.ind')
3_regroup_data/out/nhd_120052195.rds.ind:
command: regroup_data(nhd_id = I("nhd_120052195"), state_src = I("DOW"),
state_id = I(c('39000200')), wqp_file = '1_data_wqp/out/nhd_120052195.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_120052195.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_120052195.rds:
command: s3_get('3_regroup_data/out/nhd_120052195.rds.ind')
3_regroup_data/out/nhd_2360642.rds.ind:
command: regroup_data(nhd_id = I("nhd_2360642"), state_src = I("DOW"),
state_id = I(c('48000200')), wqp_file = '1_data_wqp/out/nhd_2360642.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_2360642.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_2360642.rds:
command: s3_get('3_regroup_data/out/nhd_2360642.rds.ind')
3_regroup_data/out/nhd_120052233.rds.ind:
command: regroup_data(nhd_id = I("nhd_120052233"), state_src = I("DOW"),
state_id = I(c('69069400')), wqp_file = '1_data_wqp/out/nhd_120052233.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_120052233.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_120052233.rds:
command: s3_get('3_regroup_data/out/nhd_120052233.rds.ind')
3_regroup_data/out/nhd_120052889.rds.ind:
command: regroup_data(nhd_id = I("nhd_120052889"), state_src = I("DOW"),
state_id = I(c('04003501')), wqp_file = '1_data_wqp/out/nhd_120052889.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_120052889.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_120052889.rds:
command: s3_get('3_regroup_data/out/nhd_120052889.rds.ind')
3_regroup_data/out/nhd_7142570.rds.ind:
command: regroup_data(nhd_id = I("nhd_7142570"), state_src = I("DOW"),
state_id = I(c('69037800','69037801','69037802')), wqp_file = '1_data_wqp/out/nhd_7142570.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_7142570.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_7142570.rds:
command: s3_get('3_regroup_data/out/nhd_7142570.rds.ind')
3_regroup_data/out/nhd_120052896.rds.ind:
command: regroup_data(nhd_id = I("nhd_120052896"), state_src = I("DOW"),
state_id = I(c('11014700')), wqp_file = '1_data_wqp/out/nhd_120052896.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_120052896.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_120052896.rds:
command: s3_get('3_regroup_data/out/nhd_120052896.rds.ind')
3_regroup_data/out/nhd_13293262.rds.ind:
command: regroup_data(nhd_id = I("nhd_13293262"), state_src = I("UWID"),
state_id = I(c('ME')), wqp_file = '1_data_wqp/out/nhd_13293262.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_13293262.nml",
'1_data_s3_assimilate/out/long_term_ntl.rds.ind','1_data_s3_assimilate/out/mendota_daily_buoy.rds.ind','1_data_s3_assimilate/out/mendota_temps_long.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_13293262.rds:
command: s3_get('3_regroup_data/out/nhd_13293262.rds.ind')
3_regroup_data/out/nhd_167122137.rds.ind:
command: regroup_data(nhd_id = I("nhd_167122137"), state_src = I("DOW"),
state_id = I(c('04003000')), wqp_file = '1_data_wqp/out/nhd_167122137.rds.ind',
nml = "2_get_model_files/nml/glm2_nhd_167122137.nml",
'1_data_s3_assimilate/out/MN_fisheries_all_temp_data_Jan2018.rds.ind','1_data_s3_assimilate/out/MPCA_temp_data_all.rds.ind','1_data_s3_assimilate/out/URL_Temp_Logger_2006_to_2017.rds.ind','1_data_s3_assimilate/out/vermillion_repeated_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Vermilion_Logger_2014.rds.ind','1_data_s3_assimilate/out/Verm_annual_tempDO_longformat.rds.ind','1_data_s3_assimilate/out/Temp_Logger_Data_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_All_2016.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2015.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2014.rds.ind','1_data_s3_assimilate/out/Sand_Bay_all_2013.rds.ind','1_data_s3_assimilate/out/Open_Water_Logger_2013.rds.ind','1_data_s3_assimilate/out/ML_observed_temperatures.rds.ind','1_data_s3_assimilate/out/LotW_WQ_Gretchen_H.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2011_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2010_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Open_Water.rds.ind','1_data_s3_assimilate/out/Logger_Temps_2009_Joes_Dock.rds.ind','1_data_s3_assimilate/out/Lake_Vermilion_2016.rds.ind','1_data_s3_assimilate/out/Joes_Dock_2013.rds.ind','1_data_s3_assimilate/out/Joes_Dock_Logger_2012.rds.ind','1_data_s3_assimilate/out/Cass_lake_emperature_Logger_Database_2008_to_present.rds.ind')
depends:
- lib/crosswalks/rawfile_to_id_crosswalk.csv
- lib/cfg/base_model_config.yml
3_regroup_data/out/nhd_167122137.rds:
command: s3_get('3_regroup_data/out/nhd_167122137.rds.ind')
3_regroup_data/out/all_data.rds.ind:
command: aggregate_all_data(outind = target_name, '3_regroup_data/out/nhd_120052238.rds.ind','3_regroup_data/out/nhd_4817675.rds.ind','3_regroup_data/out/nhd_4819397.rds.ind','3_regroup_data/out/nhd_120052195.rds.ind','3_regroup_data/out/nhd_2360642.rds.ind','3_regroup_data/out/nhd_120052233.rds.ind','3_regroup_data/out/nhd_120052889.rds.ind','3_regroup_data/out/nhd_7142570.rds.ind','3_regroup_data/out/nhd_120052896.rds.ind','3_regroup_data/out/nhd_13293262.rds.ind','3_regroup_data/out/nhd_167122137.rds.ind')
3_regroup_data/out/all_data.rds:
command: s3_get('3_regroup_data/out/all_data.rds.ind')
3_regroup_data/out/data_summary_plots.pdf:
command: data_summary_plots(outfile = target_name,
inind = '3_regroup_data/out/all_data.rds.ind',
remake_file = '3_regroup_data.yml')
3_regroup_data/out/data_summary_table.csv:
command: data_summary_csv(outfile = target_name,
inind = '3_regroup_data/out/all_data.rds.ind',
remake_file = '3_regroup_data.yml')