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Hello,
while runing perl vcf2freq.pl, I encountered genotype format and looked at the code to modify it for the genotype format GT:DP:AD:GQ:PL:RNC. Could you please help wiht modifying the script for this format.
Thank you,
Shad
die("Your genotype format is not "GT:PL:AD". Looks like you used a different pipeline to generate the vcf file? You can modifiy this script if possible to support your format. Otherwise please follow the pipline given at https://github.com/USDA-ARS-GBRU/QTLsurge") unless $format eq "GT:PL:AD";
I have the following
GT:DP:AD:GQ:PL:RNC
The text was updated successfully, but these errors were encountered:
Hello,
while runing perl vcf2freq.pl, I encountered genotype format and looked at the code to modify it for the genotype format GT:DP:AD:GQ:PL:RNC. Could you please help wiht modifying the script for this format.
Thank you,
Shad
die("Your genotype format is not "GT:PL:AD". Looks like you used a different pipeline to generate the vcf file? You can modifiy this script if possible to support your format. Otherwise please follow the pipline given at https://github.com/USDA-ARS-GBRU/QTLsurge") unless $format eq "GT:PL:AD";
I have the following
GT:DP:AD:GQ:PL:RNC
The text was updated successfully, but these errors were encountered: