From 1c795ace0117b67c89b4ad6424a3a1212dd5e5ef Mon Sep 17 00:00:00 2001 From: gvegayon Date: Mon, 30 Oct 2023 00:17:35 +0000 Subject: [PATCH] Re-build Rmarkdown files --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 7689a6d..1d6bc7e 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ This project’s main contents are located in the project’s # USCbiostats R packages -As of 2023-10-22, the packages listed here have been cited **130** times +As of 2023-10-30, the packages listed here have been cited **131** times (source: Google Scholar). | Name | Description | Citations | @@ -27,7 +27,7 @@ As of 2023-10-22, the packages listed here have been cited **130** times | [**fmcmc**](https://github.com/USCbiostats/fmcmc) | A friendly MCMC framework [![CRAN status](https://www.r-pkg.org/badges/version/fmcmc)](https://CRAN.R-project.org/package=fmcmc) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/fmcmc)](https://cran.r-project.org/package=fmcmc) [![status](https://tinyverse.netlify.com/badge/fmcmc)](https://CRAN.R-project.org/package=fmcmc) | [7](https://scholar.google.com/scholar?cites=18235425292318567621&hl=en) | | [**gesso**](https://github.com/USCbiostats/gesso) | Hierarchical GxE Interactions in a Regularized Regression Model [![CRAN status](https://www.r-pkg.org/badges/version/gesso)](https://CRAN.R-project.org/package=gesso) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/gesso)](https://cran.r-project.org/package=gesso) [![status](https://tinyverse.netlify.com/badge/gesso)](https://CRAN.R-project.org/package=gesso) | [3](https://scholar.google.com/scholar?cites=PbkWjCSETP0J&hl=en) | | [**GxEScanR**](https://github.com/USCbiostats/GxEScanR) | R version of GxEScan [![CRAN status](https://www.r-pkg.org/badges/version/GxEScanR)](https://CRAN.R-project.org/package=GxEScanR) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/GxEScanR)](https://cran.r-project.org/package=GxEScanR) [![status](https://tinyverse.netlify.com/badge/GxEScanR)](https://CRAN.R-project.org/package=GxEScanR) | | -| [**HiLDA**](https://github.com/USCbiostats/HiLDA) | An R package for inferring the mutational exposures difference between groups[![](https://img.shields.io/badge/Bioconductor%20version-1.0.0-green.svg)](https://www.bioconductor.org/packages/HiLDA)[![](https://img.shields.io/badge/download-4360/total-blue.svg)](https://bioconductor.org/packages/stats/bioc/HiLDA) | [6](https://scholar.google.com/scholar?cites=2767354745053140554&hl=en) | +| [**HiLDA**](https://github.com/USCbiostats/HiLDA) | An R package for inferring the mutational exposures difference between groups[![](https://img.shields.io/badge/Bioconductor%20version-1.0.0-green.svg)](https://www.bioconductor.org/packages/HiLDA)[![](https://img.shields.io/badge/download-4376/total-blue.svg)](https://bioconductor.org/packages/stats/bioc/HiLDA) | [6](https://scholar.google.com/scholar?cites=2767354745053140554&hl=en) | | [**hJAM**](https://github.com/USCbiostats/hJAM) | hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies. [![CRAN status](https://www.r-pkg.org/badges/version/hJAM)](https://CRAN.R-project.org/package=hJAM) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/hJAM)](https://cran.r-project.org/package=hJAM) [![status](https://tinyverse.netlify.com/badge/hJAM)](https://CRAN.R-project.org/package=hJAM) | [4](https://scholar.google.com/scholar?cites=5_2ea7Z8nBIJ&hl=en) | | [**iMutSig**](https://github.com/USCbiostats/iMutSig) | A web application to identify the most similar mutational signature using shiny | [1](https://scholar.google.com/scholar?cites=16599818872657505515&hl=en) | | [**jsPhyloSVG**](https://github.com/USCbiostats/jsPhyloSVG) | htmlwidgets for the jsPhyloSVG JavaScript library | | @@ -38,10 +38,10 @@ As of 2023-10-22, the packages listed here have been cited **130** times | [**pfamscanr**](https://github.com/USCbiostats/pfamscanr) | An R client for EMBL-EBI’s PfamScan API | | | [**polygons**](https://github.com/USCbiostats/polygons) | Flexible functions for computing polygons coordinates in R | | | [**rphyloxml**](https://github.com/USCbiostats/rphyloxml) | Read and write phyloXML files in R | | -| [**selectKSigs**](https://github.com/USCbiostats/selectKSigs) | Selection of K in finding the number of mutational signatures[![](https://img.shields.io/badge/Bioconductor%20version-1.0.0-green.svg)](https://www.bioconductor.org/packages/selectKSigs)[![](https://img.shields.io/badge/download-3210/total-blue.svg)](https://bioconductor.org/packages/stats/bioc/selectKSigs) | | +| [**selectKSigs**](https://github.com/USCbiostats/selectKSigs) | Selection of K in finding the number of mutational signatures[![](https://img.shields.io/badge/Bioconductor%20version-1.0.0-green.svg)](https://www.bioconductor.org/packages/selectKSigs)[![](https://img.shields.io/badge/download-3226/total-blue.svg)](https://bioconductor.org/packages/stats/bioc/selectKSigs) | | | [**slurmR**](https://github.com/USCbiostats/slurmR) | slurmR: A Lightweight Wrapper for Slurm [![CRAN status](https://www.r-pkg.org/badges/version/slurmR)](https://CRAN.R-project.org/package=slurmR) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/slurmR)](https://cran.r-project.org/package=slurmR) [![status](https://tinyverse.netlify.com/badge/slurmR)](https://CRAN.R-project.org/package=slurmR) | [5](https://scholar.google.com/scholar?cites=2044081763350723149&hl=en) | | [**xrnet**](https://github.com/USCbiostats/xrnet) | R Package for Hierarchical Regularized Regression to Incorporate External Data [![CRAN status](https://www.r-pkg.org/badges/version/xrnet)](https://CRAN.R-project.org/package=xrnet) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/xrnet)](https://cran.r-project.org/package=xrnet) [![status](https://tinyverse.netlify.com/badge/xrnet)](https://CRAN.R-project.org/package=xrnet) | [1](https://scholar.google.com/scholar?cites=12362903479655163477&hl=en) | -| [**xtune**](https://github.com/USCbiostats/xtune) | An R package for Lasso and Ridge Regression with differential penalization based on prior knowledge [![CRAN status](https://www.r-pkg.org/badges/version/xtune)](https://CRAN.R-project.org/package=xtune) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/xtune)](https://cran.r-project.org/package=xtune) [![status](https://tinyverse.netlify.com/badge/xtune)](https://CRAN.R-project.org/package=xtune) | [18](https://scholar.google.com/scholar?cites=12002990865154112222&hl=en) | +| [**xtune**](https://github.com/USCbiostats/xtune) | An R package for Lasso and Ridge Regression with differential penalization based on prior knowledge [![CRAN status](https://www.r-pkg.org/badges/version/xtune)](https://CRAN.R-project.org/package=xtune) [![CRAN downloads](http://cranlogs.r-pkg.org/badges/grand-total/xtune)](https://cran.r-project.org/package=xtune) [![status](https://tinyverse.netlify.com/badge/xtune)](https://CRAN.R-project.org/package=xtune) | [19](https://scholar.google.com/scholar?cites=12002990865154112222&hl=en) | To update this list, modify the file [packages.csv](packages.csv). The `README.md` file is updated automatically using GitHub Actions, so