diff --git a/bin/myofinder.msi b/bin/myofinder.msi index b64a833..3931151 100644 Binary files a/bin/myofinder.msi and b/bin/myofinder.msi differ diff --git a/setup.py b/setup.py index 08a0c50..eaabd06 100644 --- a/setup.py +++ b/setup.py @@ -27,6 +27,7 @@ of them, visualizing the output, and manually correcting it if needed. It relies on the DeepCell library for performing the image segmentation. """, + long_description_content_type='text/plain', keywords='segmentation,fusion index,automation,muscle culture', license='GPL V3', classifiers=['Development Status :: 5 - Production/Stable ', diff --git a/src/myofinder/__version__.py b/src/myofinder/__version__.py index ba669b7..9fb71f3 100644 --- a/src/myofinder/__version__.py +++ b/src/myofinder/__version__.py @@ -1,3 +1,3 @@ # coding: utf-8 -__version__ = '1.0.3' +__version__ = '1.0.4' diff --git a/src/myofinder/image_segmentation.py b/src/myofinder/image_segmentation.py index cbfdf4a..7cdffcb 100644 --- a/src/myofinder/image_segmentation.py +++ b/src/myofinder/image_segmentation.py @@ -62,11 +62,6 @@ def __call__(self, raise IOError("Could not load the image for segmentation, " "aborting !") - # Removing the scale bar - image[(image[:, :, 0] > 50) & - (image[:, :, 1] > 50) & - (image[:, :, 2] > 50)] = (0, 0, 0) - nuclei_channel = image[:, :, colors[0]] fiber_channel = image[:, :, colors[1]] diff --git a/src/windows_installer/config.aip b/src/windows_installer/config.aip index bfd3d0b..e391bf3 100644 --- a/src/windows_installer/config.aip +++ b/src/windows_installer/config.aip @@ -15,7 +15,7 @@ - + diff --git a/src/windows_installer/start_myofinder.bat b/src/windows_installer/start_myofinder.bat index 1e633fb..0432ed4 100644 --- a/src/windows_installer/start_myofinder.bat +++ b/src/windows_installer/start_myofinder.bat @@ -41,7 +41,7 @@ echo Checking if the dependencies are installed echo The dependencies are installed ) || ( echo The dependencies are not installed, installing them - %base_path%\venv\Scripts\python -m pip install myofinder + %base_path%\venv\Scripts\python -m pip install myofinder==1.0.4 ) echo.