test_python_package.yml

# Installs the Python dependencies, installs MyoFInDer, and checks that it imports
name: Test Python Package

on:
  # Runs on pull requests targeting the default branch
  pull_request:
    types: [opened, edited, reopened, synchronize]
    branches: ["main"]

  # May also be started manually
  workflow_dispatch:

  # Runs automatically every first day of the month
  schedule:
    - cron: '0 12 1 * *'

jobs:
  test-python-package:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        # Run on all the supported Python versions
        python-version: ["3.7", "3.8", "3.9", "3.10"]
        # Run on all the supported platforms
        os: [ubuntu-latest, windows-latest, macos-latest]

    steps:
    # Checkout the repository
    - name: Checkout
      uses: actions/checkout@v4
    # Set up the correct version of Python
    - name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
    # Install the build dependencies
    - name: Install Dependencies
      run: python -m pip install --upgrade pip wheel build setuptools
    # Install the MyoFInDer Python module
    - name: Install MyoFInDer
      run: python -m pip install .
    # On Windows, MyoFInDer can run even though there is no graphical environment
    - name: Run MyoFInDer (Windows)
      if: runner.os == 'Windows'
      run: python -m myofinder -t
    # On macOS and Linux, it is not possible to start the module without a graphical environment
    - name: Import MyoFInDer (macOS and Linux)
      if: contains(fromJSON('["macOS", "Linux"]'), runner.os)
      run: python -c "import myofinder;print(myofinder.__version__)"