You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, while i was trying to run ncbi blast in apscale, in some of the fasta subsets i keep encountering this error. I've tried to exclude uncultured sample sequences during blast search and downloaded xml2 files but i still had the same error. Has anyone had a similar issue? Could it be related with a specific OTU causing this error because it gets a hit in blastn that does not fit into the format of the program?
Thanks in advance!
Traceback (most recent call last):
File "c:\users\marja\appdata\local\programs\python\python39\lib\runpy.py", line 197, in _run_module_as_main
return run_code(code, main_globals, None,
File "c:\users\marja\appdata\local\programs\python\python39\lib\runpy.py", line 87, in run_code
exec(code, run_globals)
File "C:\Users\marja\AppData\Local\Programs\Python\Python39\Scripts\apscale_gui.exe_main.py", line 7, in
File "c:\users\marja\appdata\local\programs\python\python39\lib\site-packages\apscale_gui_main.py", line 611, in main
blast_xml_to_taxonomy(fasta_file, xml_files, read_table, limit)
File "c:\users\marja\appdata\local\programs\python\python39\lib\site-packages\apscale_gui\blast_utilities.py", line 237, in blast_xml_to_taxonomy
if 'uncultured' in hit[6]:
TypeError: argument of type 'float' is not iterable
The text was updated successfully, but these errors were encountered:
Hi, while i was trying to run ncbi blast in apscale, in some of the fasta subsets i keep encountering this error. I've tried to exclude uncultured sample sequences during blast search and downloaded xml2 files but i still had the same error. Has anyone had a similar issue? Could it be related with a specific OTU causing this error because it gets a hit in blastn that does not fit into the format of the program?
Thanks in advance!
Traceback (most recent call last):
File "c:\users\marja\appdata\local\programs\python\python39\lib\runpy.py", line 197, in _run_module_as_main
return run_code(code, main_globals, None,
File "c:\users\marja\appdata\local\programs\python\python39\lib\runpy.py", line 87, in run_code
exec(code, run_globals)
File "C:\Users\marja\AppData\Local\Programs\Python\Python39\Scripts\apscale_gui.exe_main.py", line 7, in
File "c:\users\marja\appdata\local\programs\python\python39\lib\site-packages\apscale_gui_main.py", line 611, in main
blast_xml_to_taxonomy(fasta_file, xml_files, read_table, limit)
File "c:\users\marja\appdata\local\programs\python\python39\lib\site-packages\apscale_gui\blast_utilities.py", line 237, in blast_xml_to_taxonomy
if 'uncultured' in hit[6]:
TypeError: argument of type 'float' is not iterable
The text was updated successfully, but these errors were encountered: