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Hello,
Our automated docker build runs:
python3 -m celltypist.command_line --update-models --quiet
and after the latest release, we get:
#8 808.0 TypeError: main() got an unexpected keyword argument 'use_gpu'
#8 ERROR: process "/bin/sh -c if [ \"${GH_PAT}\" != 'NOT_SET' ];then echo 'Setting GITHUB_PAT to: '${GH_PAT}; export GITHUB_PAT=\"${GH_PAT}\";fi \t&& Rscript -e \"BiocManager::install(ask = F, upgrade = 'always');\" && cd /RIRA && Rscript -e \"devtools::install_deps(pkg = '.', dependencies = TRUE, upgrade = 'always');\" && R CMD build . && R CMD INSTALL --build *.tar.gz && rm -Rf /tmp/downloaded_packages/ /tmp/*.rds \t&& python3 -m celltypist.command_line --update-models --quiet" did not complete successfully: exit code: 1
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> [3/3] RUN if [ "***" != 'NOT_SET' ];then echo 'Setting GITHUB_PAT to: '***; export GITHUB_PAT="***";fi && Rscript -e "BiocManager::install(ask = F, upgrade = 'always');" && cd /RIRA && Rscript -e "devtools::install_deps(pkg = '.', dependencies = TRUE, upgrade = 'always');" && R CMD build . && R CMD INSTALL --build *.tar.gz && rm -Rf /tmp/downloaded_packages/ /tmp/*.rds && python3 -m celltypist.command_line --update-models --quiet:
808.0 File "/usr/local/lib/python3.12/dist-packages/click/core.py", line 1363, in main
808.0 rv = self.invoke(ctx)
808.0 ^^^^^^^^^^^^^^^^
808.0 File "/usr/local/lib/python3.12/dist-packages/click/core.py", line 1226, in invoke
808.0 return ctx.invoke(self.callback, **ctx.params)
808.0 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
808.0 File "/usr/local/lib/python3.12/dist-packages/click/core.py", line 794, in invoke
808.0 return callback(*args, **kwargs)
808.0 ^^^^^^^^^^^^^^^^^^^^^^^^^
808.0 TypeError: main() got an unexpected keyword argument 'use_gpu'
should that command work?
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