After the EasyFuse Python package is installed as described in the README, run the integration tests with make.
You may need to edit the test scripts to use an appropriate reference folder in --reference.
Increase the version in the property VERSION in the file nextflow.config.
The Python and R code are distributed as a Python package and this is imported in EasyFuse pipeline via conda. But, for development purposes the import of this package can be skipped while all other dependencies are still managed via conda.
Use the flag --disable_pyeasyfuse_conda, this will rely on whatever version of
pyeasyfuse has been installed on your environment.