update to better match OS

Author: jakebeal

template_analysis/batch_template.m

@@ -49,13 +49,12 @@
 
 % Make output plots
 TASBEConfig.set('OS.StemName','LacI-CAGop');
-TASBEConfig.set('OS.Directory','plots');
 TASBEConfig.set('OS.FixedInputAxis',[1e4 1e10]);
 plot_batch_histograms(results,sampleresults,{'b','y','r'},CM);
 
 [statisticsFile, histogramFile] = serializeBatchOutput(file_pairs, CM, AP, sampleresults, '../');
 
-save('LacI-CAGop-batch.mat','AP','bins','file_pairs','OS','results','sampleresults');
+save('LacI-CAGop-batch.mat','AP','bins','file_pairs','results','sampleresults');
 
 % Dump CSV files:
 fprintf('Dumping CSV files\n');

template_analysis/plusminus_template.m

@@ -47,7 +47,6 @@
 
 % Execute the actual analysis
 TASBEConfig.set('OS.DeviceName',device_name);
-TASBEConfig.set('OS.Directory','plots/');
 results = process_plusminus_batch( CM, batch_description, AP);
 
 % Make additional output plots

template_analysis/transfercurve_template.m

@@ -56,7 +56,6 @@
 
 % Make output plots
 TASBEConfig.set('OS.StemName','Fine');
-TASBEConfig.set('OS.Directory','plots');
 
 % Plot how the constitutive fluorescence was distributed
 TASBEConfig.set('OS.DeviceName',device_name);

template_colormodel/make_color_model.m

@@ -64,7 +64,6 @@
 % Ignore channel data for ith channel if below 10^[value(i)]
 CM=set_translation_channel_min(CM,[2,2,2]);
 
-TASBEConfig.set('path', 'plots');
 % When dealing with very strong fluorescence, use secondary channel to segment
 %settings = setSetting(settings,'SecondaryBeadChannel','PE-Texas_Red-A');
 CM = add_filter(CM,autogate);