Installation problems through pip

[PierreKervella]

Hello,

I m trying to install Starfish to MacOS, but either through the standard channel or the git version I obtain error messages that prevent the completion of the installation. Thank you in advance for looking into these problems. Here are the details:

Release from PyPI

% pip install astrostarfish

Collecting astrostarfish
  Using cached astrostarfish-0.4.0-py3-none-any.whl.metadata (7.6 kB)
Collecting astropy==4.* (from astrostarfish)
  Using cached astropy-4.3.1.tar.gz (7.6 MB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  error: subprocess-exited-with-error
  
  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [59 lines of output]
      ./astropy/wcs/setup_package.py:12: SetuptoolsDeprecationWarning: dep_util is Deprecated. Use functions from setuptools.modified instead.
      !!
      
              ********************************************************************************
              Please use `setuptools.modified` instead of `setuptools.dep_util`.
      
              By 2024-May-21, you need to update your project and remove deprecated calls
              or your builds will no longer be supported.
      
              See https://github.com/pypa/setuptools/pull/4069 for details.
              ********************************************************************************
      
      !!
        from setuptools.dep_util import newer_group
      astropy/wcs/setup_package.py:12: SetuptoolsDeprecationWarning: dep_util is Deprecated. Use functions from setuptools.modified instead.
      !!
      
              ********************************************************************************
              Please use `setuptools.modified` instead of `setuptools.dep_util`.
      
              By 2024-May-21, you need to update your project and remove deprecated calls
              or your builds will no longer be supported.
      
              See https://github.com/pypa/setuptools/pull/4069 for details.
              ********************************************************************************
      
      !!
        from setuptools.dep_util import newer_group
      Traceback (most recent call last):
        File "/Users/kervella/anaconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/Users/kervella/anaconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
                                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/Users/kervella/anaconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)
                 ^^^^^^^^^^^^^^^^^^^^^
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 325, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=['wheel'])
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 295, in _get_build_requires
          self.run_setup()
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 311, in run_setup
          exec(code, locals())
        File "<string>", line 70, in <module>
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/extension_helpers/_setup_helpers.py", line 67, in get_extensions
          ext_modules.extend(setuppkg.get_extensions())
                             ^^^^^^^^^^^^^^^^^^^^^^^^^
        File "./astropy/modeling/setup_package.py", line 59, in get_extensions
          from jinja2 import Environment, FileSystemLoader
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/jinja2/__init__.py", line 33, in <module>
          from jinja2.environment import Environment, Template
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/jinja2/environment.py", line 15, in <module>
          from jinja2 import nodes
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/jinja2/nodes.py", line 19, in <module>
          from jinja2.utils import Markup
        File "/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/jinja2/utils.py", line 642, in <module>
          from markupsafe import Markup, escape, soft_unicode
      ImportError: cannot import name 'soft_unicode' from 'markupsafe' (/private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-build-env-oc_wvoq_/overlay/lib/python3.11/site-packages/markupsafe/__init__.py)
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

git development version

% pip install git+https://github.com/iancze/Starfish.git#egg=astrostarfish
Collecting astrostarfish
  Cloning https://github.com/iancze/Starfish.git to /private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-install-tcr9s196/astrostarfish_fff081c0ba374a58940037e3bb42cd36
  Running command git clone --filter=blob:none --quiet https://github.com/iancze/Starfish.git /private/var/folders/8p/tx8mnzpj2zb5tt00s61nxl0r0000gp/T/pip-install-tcr9s196/astrostarfish_fff081c0ba374a58940037e3bb42cd36
  Resolved https://github.com/iancze/Starfish.git to commit 6b20086f85ed92332543a2b30dfd56e851d593a4
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: astropy<6,>=4 in ./anaconda3/lib/python3.11/site-packages (from astrostarfish) (5.3.4)
Collecting dataclasses<0.7,>=0.6 (from astrostarfish)
  Downloading dataclasses-0.6-py3-none-any.whl.metadata (3.0 kB)
Collecting extinction==0.4.* (from astrostarfish)
  Downloading extinction-0.4.6.tar.gz (18 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting flatdict==4.* (from astrostarfish)
  Downloading flatdict-4.0.1.tar.gz (8.3 kB)
  Preparing metadata (setup.py) ... done
Requirement already satisfied: h5py==3.* in ./anaconda3/lib/python3.11/site-packages (from astrostarfish) (3.9.0)
Collecting nptyping==1.* (from astrostarfish)
  Downloading nptyping-1.4.4-py3-none-any.whl.metadata (7.7 kB)
Requirement already satisfied: numpy<2,>=1.16 in ./anaconda3/lib/python3.11/site-packages (from astrostarfish) (1.24.3)
Requirement already satisfied: scikit-learn<2,>=0.22 in ./anaconda3/lib/python3.11/site-packages (from astrostarfish) (1.3.0)
Requirement already satisfied: scipy<2,>=1.3.0 in ./anaconda3/lib/python3.11/site-packages (from astrostarfish) (1.11.3)
Requirement already satisfied: toml<0.11,>=0.10.1 in ./anaconda3/lib/python3.11/site-packages (from astrostarfish) (0.10.2)
Requirement already satisfied: tqdm==4.* in ./anaconda3/lib/python3.11/site-packages (from astrostarfish) (4.65.0)
INFO: pip is looking at multiple versions of astrostarfish to determine which version is compatible with other requirements. This could take a while.
ERROR: Package 'astrostarfish' requires a different Python: 3.11.5 not in '<3.11,>=3.7'