Merge pull request #4188 from SpikeInterface/prepare_release

Prepare release v0.103.1

Author: alejoe91

doc/development/development.rst

@@ -433,12 +433,13 @@ Where the start date is the date of the last release and the end date is the cur
 
 The date of the last release can be found on `PyPI <https://pypi.org/project/spikeinterface/>`_.
 
-
 As a specific example:
+
 .. code-block:: bash
 
     bash auto-release-notes.sh 2025-02-19 2025-03-24
 
+* Add the release to `doc/whatisnew.rst`, by adding it to the list of releases and providing a short description of the release.
 * Finish the release notes and merge
 * Locally tag the main branch with the newly merged release notes with the new version
 * Push the tag to the remote repository which will trigger the release action (.github/workflows/publish-to-pypi.yml)

doc/releases/0.103.1.rst

@@ -0,0 +1,97 @@
+.. _release0.103.1:
+
+SpikeInterface 0.103.1 release notes
+------------------------------------
+
+November 3rd 2025
+
+Minor release with bug fixes
+
+
+core:
+
+* faster write_binary_recording() (#4171)
+* Add RMS method to `get_noise_levels` (#4130)
+
+extractors:
+
+* Update `get_neuropixels_sample_shifts_from_probe` to use `adc_sample_order` (#4184)
+* Add `experiment_name`  argument to  `OpenEphysBinaryRecordingExtractor` (#4177)
+* Updates for probeinterface 0.3.0 (#4092)
+
+sorters:
+
+* Add gpu requirements to rtsort (#4143)
+
+postprocessing:
+
+* Patch for memory usage in `template_similarity` (#4152)
+
+qualitymetrics:
+
+* Alter how quality metrics check extension dependencies (#4080)
+
+curation:
+
+* Future-proof hyperparameter search space for auto-curation (#4174)
+
+widgets:
+
+* Metric list in plot (#4137)
+* Fix `plot_traces` with `t_start` and no times (#4135)
+* Fix `plot_amplitudes` for sortingview (#4097)
+
+generators:
+
+* Fix bug in waveform generation + adapt parameters (#4167)
+
+sortingcomponents:
+
+* Reducing memory footprint for Overlaps during matching (#4157)
+* Big clean in components and reoraginze in folder (#4140)
+* Improve tdc-clustering with a merging step (#4122)
+* Implement isosplit6 into spikeinterface in pure numpy/numba (#4113)
+* Improvement of TDC2, SC2 and ISOSPLIT (#4182)
+
+motion correction:
+
+* dredge: Do more things in place with the larger matrices (#4119)
+
+documentation:
+
+* Improve docs for curation module and model (#4138)
+* Fix typos and buggy code in modules docs (#4105)
+* Improve assertion error message of SortingAnalyzer job kwargs (#4178)
+
+continuous integration:
+
+* Check install ci - use uv (#4123)
+
+packaging:
+
+* Update deprecated cuda import (#4111)
+
+testing:
+
+* Fix size comparison in sorting tools test case (#4112)
+* Fix ks4 tests (#4187)
+
+deprecations:
+
+* Update deprecated cuda import (#4111)
+* Deprecated `spikeinterface.compraison.hybrid` module (#4093)
+* More return_scaled > return_in_uV (#4090)
+
+Contributors:
+
+* @alejoe91
+* @chrishalcrow
+* @cwindolf
+* @emmanuel-ferdman
+* @h-mayorquin
+* @lochhh
+* @nwatters01
+* @samuelgarcia
+* @yger
+* @zm711
+* @MGAMZ

doc/whatisnew.rst

@@ -8,6 +8,7 @@ Release notes
 .. toctree::
   :maxdepth: 1
 
+  releases/0.103.1.rst
   releases/0.103.0.rst
   releases/0.102.3.rst
   releases/0.102.2.rst
@@ -50,6 +51,11 @@ Release notes
   releases/0.9.1.rst
 
 
+Version 0.103.1
+===============
+
+* Minor release with bug fixes
+
 Version 0.103.0
 ===============
 

pyproject.toml

@@ -25,8 +25,8 @@ dependencies = [
     "threadpoolctl>=3.0.0",
     "tqdm",
     "zarr>=2.18,<3",
-    "neo>=0.14.1",
-    "probeinterface>=0.3.0",
+    "neo>=0.14.3",
+    "probeinterface>=0.3.1",
     "packaging",
     "pydantic",
     "numcodecs<0.16.0", # For supporting zarr < 3
@@ -127,8 +127,8 @@ test_core = [
 
     # for github test : probeinterface and neo from master
     # for release we need pypi, so this need to be commented
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
 
     # for slurm jobs,
     "pytest-mock"
@@ -139,8 +139,8 @@ test_extractors = [
     "pooch>=1.8.2",
     "datalad>=1.0.2",
     # Commenting out for release
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
 ]
 
 test_preprocessing = [
@@ -185,8 +185,8 @@ test = [
 
     # for github test : probeinterface and neo from master
     # for release we need pypi, so this need to be commented
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",
 
     # for slurm jobs
     "pytest-mock",
@@ -213,8 +213,8 @@ docs = [
     "huggingface_hub", # For automated curation
 
     # for release we need pypi, so this needs to be commented
-    "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",  # We always build from the latest version
-    "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",  # We always build from the latest version
+    # "probeinterface @ git+https://github.com/SpikeInterface/probeinterface.git",  # We always build from the latest version
+    # "neo @ git+https://github.com/NeuralEnsemble/python-neo.git",  # We always build from the latest version
 ]
 
 dev = [

src/spikeinterface/__init__.py

@@ -27,5 +27,5 @@
 # This flag must be set to False for release
 # This avoids using versioning that contains ".dev0" (and this is a better choice)
 # This is mainly useful when using run_sorter in a container and spikeinterface install
-DEV_MODE = True
-# DEV_MODE = False
+# DEV_MODE = True
+DEV_MODE = False