NAMESPACE

# Generated by roxygen2: do not edit by hand

export(.mockRefData)
export(.mockTestData)
export(BlueprintEncodeData)
export(DatabaseImmuneCellExpressionData)
export(HumanPrimaryCellAtlasData)
export(ImmGenData)
export(MonacoImmuneData)
export(MouseRNAseqData)
export(NovershternHematopoieticData)
export(SingleR)
export(aggregateReference)
export(classifySingleR)
export(combineCommonResults)
export(combineRecomputedResults)
export(configureMarkerHeatmap)
export(getClassicMarkers)
export(getDeltaFromMedian)
export(matchReferences)
export(plotDeltaDistribution)
export(plotMarkerHeatmap)
export(plotScoreDistribution)
export(plotScoreHeatmap)
export(pruneScores)
export(rebuildIndex)
export(trainSingleR)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,List)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(BiocNeighbors,AnnoyParam)
importFrom(BiocNeighbors,KmknnParam)
importFrom(BiocNeighbors,defineBuilder)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bpnworkers)
importFrom(DelayedArray,DelayedArray)
importFrom(DelayedArray,is_sparse)
importFrom(DelayedArray,rowMaxs)
importFrom(DelayedArray,rowMins)
importFrom(DelayedMatrixStats,rowAnyNAs)
importFrom(DelayedMatrixStats,rowMedians)
importFrom(Matrix,rowMeans)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,I)
importFrom(S4Vectors,List)
importFrom(S4Vectors,isSingleString)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,selfmatch)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(beachmat,initializeCpp)
importFrom(beachmat,tatami.row.nan.counts)
importFrom(methods,as)
importFrom(methods,is)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(utils,head)
importFrom(utils,relist)
useDynLib(SingleR)