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Merged
jasonsethrothman merged 3 commits into from
Jan 19, 2026
Merged

pyNM restructure : separate GUI dependencies from core package #8

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de44f98
Restructured pyNM folder structure
jasonsethrothman Jan 14, 2026
69f5548
Renamed test files
jasonsethrothman Jan 14, 2026
349b566
Separate GUI dependencies from core package
jasonsethrothman Jan 19, 2026
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0 .github/workflows/ci.yml → .github/workflows/ci.yml.old
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59 changes: 59 additions & 0 deletions .github/workflows/tests-core.yml
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name: Test Core (No GUI)

on:
push:
branches:
- master
- main
- development
pull_request:
branches:
- master
- main
- development

jobs:
test-core:
name: Core Tests - Python ${{ matrix.python-version }} on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]

steps:
- uses: actions/checkout@v3

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}

- name: Install core dependencies only
run: |
python -m pip install --upgrade pip
pip install -e .
pip install pytest pytest-cov

- name: Verify GUI not imported
run: |
python -c "import pyneuromatic; print('✓ Core imported successfully')"
python -c "import sys; import pyneuromatic; assert 'PyQt6' not in sys.modules, 'PyQt6 should not be imported'"

- name: Run core tests
run: |
pytest tests/test_core/ tests/test_analysis/ -v --cov=pyneuromatic --cov-report=xml --cov-report=term -m "not gui"

- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
with:
file: ./coverage.xml
flags: core
name: core-${{ matrix.os }}-${{ matrix.python-version }}
continue-on-error: true

- name: Lint with flake8
run: |
pip install flake8
flake8 pyneuromatic/core/ pyneuromatic/analysis/ --count --show-source --max-line-length=127 --statistics
67 changes: 67 additions & 0 deletions .github/workflows/tests-gui.yml
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name: Test GUI

on:
push:
branches:
- master
- main
- development
pull_request:
branches:
- master
- main
- development

jobs:
test-gui:
name: GUI Tests - Python ${{ matrix.python-version }}
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12"]

steps:
- uses: actions/checkout@v3

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}

- name: Install system dependencies for Qt
run: |
sudo apt-get update
sudo apt-get install -y \
xvfb \
libxkbcommon-x11-0 \
libxcb-icccm4 \
libxcb-image0 \
libxcb-keysyms1 \
libxcb-randr0 \
libxcb-render-util0 \
libxcb-xinerama0 \
libxcb-xfixes0 \
x11-utils

- name: Install GUI dependencies
run: |
python -m pip install --upgrade pip
pip install -e ".[gui]"
pip install pytest pytest-qt pytest-cov

- name: Verify GUI available
run: |
python -c "from pyneuromatic.gui import check_gui_available; check_gui_available(); print('✓ GUI dependencies available')"

- name: Run GUI tests with xvfb
run: |
xvfb-run -a pytest tests/test_gui/ -v --cov=pyneuromatic.gui --cov-report=xml --cov-report=term -m "gui or not core"

- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
with:
file: ./coverage.xml
flags: gui
name: gui-${{ matrix.python-version }}
continue-on-error: true
171 changes: 165 additions & 6 deletions .gitignore
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# Byte-compiled / optimized / DLL files
__pycache__/
*.pyc
*.*~
*.egg-info
build
dist
*.py[cod]
*$py.class

.venv/
# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/
docs/_static/
docs/_templates/

# PyBuilder
.pybuilder/
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
Pipfile.lock

# poetry
poetry.lock

# pdm
.pdm.toml

# PEP 582
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
/.coverage
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Cython debug symbols
cython_debug/

# IDEs
.vscode/
.idea/
*.swp
*.swo
*~
*.bak

# OS
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Project-specific
data/
results/
logs/
*.hdf5
*.h5
*.abf
*.axgx
*.dat

# Temporary files
tmp/
temp/
*.tmp
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