From 0bafa99b7a0519b824d985427b4010b0777a0794 Mon Sep 17 00:00:00 2001 From: Sherine Awad-Mahmoud Date: Mon, 21 Feb 2022 12:08:25 +0000 Subject: [PATCH] Update READEME --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 6e0544b..ecee495 100644 --- a/README.md +++ b/README.md @@ -18,9 +18,9 @@ You can run the pipeline in -use-conda mode to pull these tools automatically. S ### Edit config file -You will need to edit the *config file* to match your samples and paramteres. +You will need to edit the *config file* to match your samples and parameters. -The pipeline expects samples with suffix ".r_1.fq.gz" and ".r_2.fq.gz" if samples are paired-end. +The pipeline expects samples with suffix ".r_1.fq.gz" and ".r_2.fq.gz" if the samples are paired-end. Any prefix before this suffix is the sample name and to be written in the "samples.tsv". For single-end reads, the samples suffix is ".fq.gz" and any prefix before this suffix is written in the **"samples.tsv"**. For example, if your sample name is sample1.s_1.r_1.fq.gz, then your sample name in the samples file should be sample1.s_1.